Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33580 211 / 2e-62 Protein kinase superfamily protein (.1) AT1G51940 140 / 6e-37 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT2G23770 135 / 5e-35 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT2G28940 122 / 7e-32 Protein kinase superfamily protein (.1.2) AT2G39110 123 / 2e-31 Protein kinase superfamily protein (.1) AT3G09830 122 / 3e-31 Protein kinase superfamily protein (.1.2) AT3G58690 120 / 2e-30 Protein kinase superfamily protein (.1) AT5G03320 118 / 1e-29 Protein kinase superfamily protein (.1) AT1G16260 119 / 2e-29 Wall-associated kinase family protein (.1.2) AT5G15080 118 / 2e-29 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008586 [exp] 314 / 2e-101 AT2G33580 594 / 0.0 Protein kinase superfamily protein (.1) Lus10019661 [exp] 162 / 1e-44 AT2G23770 483 / 8e-164 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10000577 [exp] 160 / 8e-44 AT2G23770 490 / 1e-166 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10032735 [exp] 149 / 8e-40 AT2G23770 305 / 1e-94 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10018788 [exp] 146 / 1e-38 AT2G23770 312 / 3e-97 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10022488 [exp] 145 / 2e-38 AT2G23770 391 / 2e-128 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10006841 [exp] 145 / 3e-38 AT1G51940 812 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10041171 [exp] 142 / 2e-37 AT2G33580 224 / 1e-64 Protein kinase superfamily protein (.1) Lus10037586 [exp] 142 / 2e-37 AT1G51940 807 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G259600 [exp] 256 / 2e-79 AT2G33580 637 / 0.0 Protein kinase superfamily protein (.1) Potri.005G128200 [exp] 174 / 8e-49 AT2G23770 514 / 4e-176 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.007G032100 [exp] 159 / 3e-43 AT2G23770 513 / 6e-175 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.001G190200 [exp] 150 / 2e-40 AT1G51940 824 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.014G040000 [exp] 144 / 3e-38 AT2G23770 345 / 1e-110 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.014G156400 [exp] 142 / 1e-37 AT3G21630 678 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Potri.008G160600 [exp] 139 / 2e-36 AT2G33580 217 / 8e-62 Protein kinase superfamily protein (.1) Potri.006G252600 [exp] 139 / 2e-36 AT1G51940 326 / 4e-103 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.002G226600 [exp] 139 / 3e-36 AT3G21630 697 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Potri.010G078700 [exp] 134 / 1e-34 AT2G23770 288 / 5e-89 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10042225 pacid=23153643 polypeptide=Lus10042225 locus=Lus10042225.g ID=Lus10042225.BGIv1.0 annot-version=v1.0 ATGTTCCCGCTCCACCTTCTCCTTCTCCTTCTCCTAATCCTAATCCCGCCATCCGCCGGCCAGCAAAGCTACGTCGCCAACCACCAGCTCACCTGCTACG ACCAGACCTTCAACCACACAACTCTAGGCTACCTCTGCAATGCCCCCCCCCTCCTGTCATTCCTATCTCACCTTACGATCCTCACCGCAGTACTCCACCC CACTCTACATCGCCTACCTCCTTGGCCTCCCAACGCCCTCGCCGACAACCTCTCCTCCGACATCGCCTCCATCCCTTCCGACACCCTCGTCGCCATCCCT GTCAATTGCTCCTGCTCTGGATCCATCTCCGGCCAACGGTACTATCAGCACAAAGCCACCTACGCCGTCAAATCCCGAGATGAAACCTACTTCTCCGTCG CCAACAACACCTACCAAGGTCTCACCACTTGCCAAGCCCTAATGTCGCAGAATCGTTTCAGCGGTCGTCGCCTTTTCGTCGATATGACTCTCACCGTCCC TCTCCGTTGCGTCTGTCCTACTGCTGATGCTCTTAACTATCTCCACAGCTACACTAACCCTCCATACATTCACAAGAACTTGACGACTAGTAACATCCTC TTGGATGCTGGGTTTCGAGGTAAGGTCACGAATTTCGGGCTGGCGAGAGTGGCTGGTAAGGATGATGATGGTGTATCCTATCTGACAAGGCATGTGGTTG GAACTCATGGCTATATGGCTCCGGAATACATAGAGAATGGACTCATTACACCCAAGCTCGATGTTTTTGCATTTGGGGTCGTGTTACTCGAGCTTCTTTC GGGGAAAGAAGCTGCTGCTAAAAACGCAAGAGGTGAAGAAATGCTCTTTAGCTCGATAAACAGGGTTCTTGAAGGAGACAATGTCAGGGACAAGCTGCGG GCTTCCATCGATCCCTCATTAACTGAGGAAGATTACACGTTAGATCTCGCCTTCTCCTTGGCTCAACTCGCAAACAGGTGCGTGTCTCGAGACCTCAAAG ATCGGCCTGGCATGCCCCAGGTTTTGATGACTTTGTCCAAGATAGTTTTCCCTTCACTGGACTGGGATCCTTGA
AA sequence Show only first row Show all	>Lus10042225 pacid=23153643 polypeptide=Lus10042225 locus=Lus10042225.g ID=Lus10042225.BGIv1.0 annot-version=v1.0 MFPLHLLLLLLLILIPPSAGQQSYVANHQLTCYDQTFNHTTLGYLCNAPPLLSFLSHLTILTAVLHPTLHRLPPWPPNALADNLSSDIASIPSDTLVAIP VNCSCSGSISGQRYYQHKATYAVKSRDETYFSVANNTYQGLTTCQALMSQNRFSGRRLFVDMTLTVPLRCVCPTADALNYLHSYTNPPYIHKNLTTSNIL LDAGFRGKVTNFGLARVAGKDDDGVSYLTRHVVGTHGYMAPEYIENGLITPKLDVFAFGVVLLELLSGKEAAAKNARGEEMLFSSINRVLEGDNVRDKLR ASIDPSLTEEDYTLDLAFSLAQLANRCVSRDLKDRPGMPQVLMTLSKIVFPSLDWDP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33580			Protein kinase superfamily pro...		Lus10042225 [exp]	0	1
AT5G55180			O-Glycosyl hydrolases family 1...		Lus10029149 [exp]	4.6	0.8082
AT1G05810		ARA, Ara-1, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10038226 [exp]	5.7	0.8751
AT4G22570		APT3	adenine phosphoribosyl transfe...		Lus10024612 [exp]	6.9	0.8065
AT5G48540			receptor-like protein kinase-r...		Lus10038227 [exp]	8.2	0.8389
AT3G47110			Leucine-rich repeat protein ki...		Lus10022863 [exp]	10.6	0.8303
AT4G12440		APT4	adenine phosphoribosyl transfe...		Lus10032249 [exp]	11.6	0.8318
AT5G41610		ATCHX18	cation/H+ exchanger 18, ARABID...		Lus10017540 [exp]	13.0	0.7939
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10021540 [exp]	13.6	0.8188
AT2G15820		OTP51	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10023856 [exp]	17.5	0.8035
AT4G27290			S-locus lectin protein kinase ...		Lus10037736 [exp]	17.9	0.7898

Compare expression of checked genes

Lus10042225 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.