Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30350 252 / 1e-80 Excinuclease ABC, C subunit, N-terminal (.1.2) AT5G43210 53 / 3e-08 Excinuclease ABC, C subunit, N-terminal (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024187 [exp] 354 / 4e-120 AT2G30350 268 / 1e-86 Excinuclease ABC, C subunit, N-terminal (.1.2) Lus10008583 [exp] 156 / 3e-47 ND / Lus10009927 [exp] 65 / 1e-11 ND 37 / 0.009
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G127600 [exp] 274 / 8e-87 AT2G30350 269 / 5e-85 Excinuclease ABC, C subunit, N-terminal (.1.2) Potri.013G155900 [exp] 268 / 4e-85 AT2G30350 268 / 4e-85 Excinuclease ABC, C subunit, N-terminal (.1.2) Potri.001G260600 [exp] 55 / 2e-08 AT5G43210 165 / 7e-52 Excinuclease ABC, C subunit, N-terminal (.1) Potri.001G259216 [exp] 54 / 2e-08 AT5G43210 168 / 1e-53 Excinuclease ABC, C subunit, N-terminal (.1) Potri.001G259900 [exp] 54 / 2e-08 AT5G43210 168 / 1e-53 Excinuclease ABC, C subunit, N-terminal (.1) Potri.001G260300 [exp] 51 / 2e-07 AT5G43210 132 / 1e-39 Excinuclease ABC, C subunit, N-terminal (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0418 [flax] [poplar] GIY-YIG PF01541 [flax] [poplar] GIY-YIG GIY-YIG catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10042228 pacid=23153896 polypeptide=Lus10042228 locus=Lus10042228.g ID=Lus10042228.BGIv1.0 annot-version=v1.0 ATGGCACGAAGGAAAACGCCAAAGACCAGATCAAATCGGAAGAACAAGGGAAACAAGATCAAGCCTGAAACCCTAGTTCCTGAATCCTGCGAAGAATCAG CCATGAAGGTCAAGAACGCAGATGAAAATGGAGGATCAAACAAATTCTACGCCTGCTACCTCCTCACTTCTCTCTCCCCTCGTTCCAAGTCCACCTATAT CGGATTCACCGTGAATCCGCGTCGTCGAATTCGGCAGCACAATGGCGAAATCACGAGCGGCGCTTGCAAGACGAAGAAACGACGGCCCTGGGAAATGGTC CTTTGCATCTATGGCTTCCCAACGAATGTCTCTGCCCTCCAGTTTGAGTGGGCATGGCAGCATCCGAGGGAATCGAAAGCTGTAAGGCAGGCGGTGGCGA GCTTCAAATCGTTCACCGGAATTGCTAACAAGATCAAACTTGCTTACACCATGCTTACTCTTCCTCCTTGGCAGAGCTTGAACATTACTGTCAACTATTT CTCAACAAAGCACACAAGTTGCTCATCTGGTTTGCCCAGTTTACCGGAGCATATGAAAGTCCGACTTTGCTCCATGGATGAGCTACCTTGCTATTCGAAA ACGGTTGGTGATGGTAGCTTGCTTGATGAACGAGAAGATGAAGAACACAGTTCGAGTAATGAATCGAGTGGAAATGCAGAGGATGGCGTTGTTGAATGCG AAGATGATGAGAAATCCAGTGACAGAAACAATACGAATGGAAATGCAGGAGAAACAGAAGAAACCTTTACAGATTACGCTGGTAGCATCGACACGGCTTC TGTCGAAAAGTATGGTGTCTTTGGAGGACGGGAGTGGCGGTGGAAAAGTTGTTCCTCTAACCCATCTCCAGAAGTAGTCCATGTTACGAACGATGTTTCG CCACCGAGAAGAATGTCTCCCATTCGTAGCGAGTTCTTTGTCAAAGAGACTGGAGATGGGGATGTGTTGGTTCTGATCGATGCAAGTGATTCGAAACCGG GTCCCATCAAAAGGAAAGAACCCTTCCATTCTGCCAAAGTTCATCATCAAATTGAAGTTATAGACCTGGTGTCTCCATCTCCAGAATGCAGAATGTGGCC GGTCAGAAAGAAAGGAAGATTCTTTTCTGCTGGTATTTCTCCCCAAATCTTTGACTTGTCTTGA
AA sequence Show only first row Show all	>Lus10042228 pacid=23153896 polypeptide=Lus10042228 locus=Lus10042228.g ID=Lus10042228.BGIv1.0 annot-version=v1.0 MARRKTPKTRSNRKNKGNKIKPETLVPESCEESAMKVKNADENGGSNKFYACYLLTSLSPRSKSTYIGFTVNPRRRIRQHNGEITSGACKTKKRRPWEMV LCIYGFPTNVSALQFEWAWQHPRESKAVRQAVASFKSFTGIANKIKLAYTMLTLPPWQSLNITVNYFSTKHTSCSSGLPSLPEHMKVRLCSMDELPCYSK TVGDGSLLDEREDEEHSSSNESSGNAEDGVVECEDDEKSSDRNNTNGNAGETEETFTDYAGSIDTASVEKYGVFGGREWRWKSCSSNPSPEVVHVTNDVS PPRRMSPIRSEFFVKETGDGDVLVLIDASDSKPGPIKRKEPFHSAKVHHQIEVIDLVSPSPECRMWPVRKKGRFFSAGISPQIFDLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30350			Excinuclease ABC, C subunit, N...		Lus10042228 [exp]	0	1
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10021652 [exp]	4.2	0.7063
AT2G22720			SPT2 chromatin protein (.1.2.3...		Lus10019243 [exp]	9.5	0.6745
AT2G13560		NAD-ME1	NAD-dependent malic enzyme 1 (...		Lus10018939 [exp]	9.6	0.7148
AT3G28430			unknown protein		Lus10018448 [exp]	9.6	0.7029
AT5G15860		ICME, ATPCME	Isoprenylcysteine methylestera...		Lus10003065 [exp]	13.9	0.6546
AT1G77260			S-adenosyl-L-methionine-depend...		Lus10028656 [exp]	15.2	0.6641
AT2G02860		ATSUT2, ATSUC3,...	ARABIDOPSIS THALIANA SUCROSE T...		Lus10030492 [exp]	16.5	0.7021
AT5G59900			Pentatricopeptide repeat (PPR)...		Lus10010410 [exp]	26.0	0.6378
AT2G13560		NAD-ME1	NAD-dependent malic enzyme 1 (...		Lus10028642 [exp]	26.2	0.6571
AT1G50120			unknown protein		Lus10013430 [exp]	28.1	0.6575

Compare expression of checked genes

Lus10042228 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.