Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58380 603 / 0 PKS2, CIPK10, SnRK3.8, SIP1 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) AT5G07070 569 / 0 CIPK2, SnRK3.2 SNF1-RELATED PROTEIN KINASE 3.2, CBL-interacting protein kinase 2 (.1) AT5G45820 501 / 2e-176 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT5G01810 482 / 3e-169 ATPK10, SnRK3.1, SIP2, PKS3, CIPK15 SNF1-RELATED PROTEIN KINASE 3.1, SOS3-INTERACTING PROTEIN 2, PROTEIN KINASE 10, CBL-interacting protein kinase 15 (.1.2.3) AT4G18700 442 / 1e-152 ATWL4, CIPK12, SnRK3.9 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) AT5G45810 439 / 2e-151 CIPK19, SnRK3.5 SNF1-RELATED PROTEIN KINASE 3.5, CBL-interacting protein kinase 19 (.1) AT4G30960 437 / 3e-151 CIPK6, SIP3, SnRK3.14, ATCIPK6 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) AT1G30270 436 / 2e-150 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT5G10930 431 / 1e-148 CIPK5, SnRK3.24 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) AT5G25110 431 / 5e-148 CIPK25, SnRK3.25 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008582 [exp] 692 / 0 AT5G58380 570 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10022749 [exp] 539 / 0 AT5G58380 598 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10014163 [exp] 532 / 0 AT5G58380 592 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10007283 [exp] 473 / 4e-165 AT5G45820 578 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Lus10021852 [exp] 461 / 9e-161 AT4G30960 658 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10036280 [exp] 459 / 4e-160 AT4G30960 662 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10029054 [exp] 444 / 4e-154 AT5G58380 483 / 4e-169 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10028115 [exp] 444 / 6e-154 AT1G30270 793 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10042816 [exp] 442 / 5e-153 AT1G30270 794 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G156000 [exp] 629 / 0 AT5G58380 623 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.019G127500 [exp] 626 / 0 AT5G58380 641 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.016G133500 [exp] 589 / 0 AT5G58380 593 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.019G048800 [exp] 568 / 0 AT5G58380 539 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.011G067500 [exp] 510 / 9e-180 AT5G45820 647 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Potri.006G186200 [exp] 471 / 2e-164 AT4G30960 649 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.018G108500 [exp] 462 / 7e-161 AT4G30960 639 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.006G062800 [exp] 457 / 7e-159 AT1G30270 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.018G119200 [exp] 446 / 4e-154 AT1G30270 749 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.006G263500 [exp] 431 / 1e-148 AT5G25110 568 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0573 [flax] [poplar] KA1-like PF03822 [flax] [poplar] NAF NAF domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10042229 pacid=23153995 polypeptide=Lus10042229 locus=Lus10042229.g ID=Lus10042229.BGIv1.0 annot-version=v1.0 ATGGAACACAAACCGAGTGTGTTGACCGAAAGATATGAGATTGGGAGGTTGCTTGGCCAAGGAACATTTGCAAAGGTTTATTATGCAAGGAGTATTAAAA CGAGCCAGAGTGTGGCGATTAAAGTGATTGATAAGGAGAAGGTTTTGAAGGTAGGGCTTGCTGATCAGATCAAGAGAGAAATATCTGTGATGAGAATTGC TAGGCACCCTAATGTTCTTCAGCTTTACGAGGTCATGGCGACCAAAAGCAAGATCTTCTTCATCGTGGAGTATGCTAAAGGTGGCGAGCTCTTCAACAAG GTTGCTAAAGGAAGGCTGAAAGAGGATGCTGCTCGTAAATATTTCCAGCAGCTGGTTAATGCTGTTGATTTCTGCCACAGTAGGGGTGTTTACCATAGGG ATATTAAGCCGGAAAATCTGCTGTTGGATGAAAATGAGAACCTGAAGGTTTCAGATTTCGGATTGAGTGCCCTAGCTGAATCGAAACGTCAAGATGGTCT ACTCCACACAACCTGTGGGACACCTGCATATGTTGCCCCTGAAGTTATCAACAGGAAAGGGTATGATGGAGCGAAGGCCGATATCTGGTCTTGCGGAGTG GTTTTATATGTACTGTTAGCAGGGTATCTTCCGTTTCATGATTCAAACCTGATGGAACTGTACAGGAAAATTGGAAAAGCTGATTTTAAATGTCCAAATT GGTTCGCTCCGGAAGCTCGCCGGCTTCTGAACAAGATATTGGATCCAAACCCTAATACAAGAATCTCCATGGCTAAGATCAAAGAAAGTTCCTGGTTTAA GAAAGGGTTGACCTCCAAGCTGATCAAACCTCCCGAAGAGGACAAAAGAAATGTGGCTCCTGTTGATGGTGATGGATCAGGTCCTTCAAGAACTTGTAGC TTACCCCGGGAGGAAAAGCCAGAACCTTCAGCCAAGCCTCCTAATGTGAATGCATTCGACATCATCTCCCTTTCAGCCGGGTTCGACCTCTCTGCACTTT TCGAGGACGATATACAAAGAAGAGAAACGAGGTTTACTTCTAGACATCCTGCATCAGTCATCATTTCCAGACTGGAGGATGCTGCCAAGCTTCTGAAAAT GAAAGTGATGAAGAAAGAAGCCGGATTGTTGAGGATGGAAGTTATGAAGGAGGGTAGAAAGGGTCTTTTGTCCATAGATGCTGAGATCTTCGAAGTCACT CCAGACTTCCATCTGGTGGAAGTCAAGAAATCTAGCGGCGATACAATGGAGTATCAGAAGATCGTCAGAGACGGAATGCAACCGGCTCTTCACGATATTG TTTGGGTTTGGCAGGGAGAAAAGGAACCGCAGCACGAAGAACAGCATCCGCCGCCACCGGAGCAGCAGTAG
AA sequence Show only first row Show all	>Lus10042229 pacid=23153995 polypeptide=Lus10042229 locus=Lus10042229.g ID=Lus10042229.BGIv1.0 annot-version=v1.0 MEHKPSVLTERYEIGRLLGQGTFAKVYYARSIKTSQSVAIKVIDKEKVLKVGLADQIKREISVMRIARHPNVLQLYEVMATKSKIFFIVEYAKGGELFNK VAKGRLKEDAARKYFQQLVNAVDFCHSRGVYHRDIKPENLLLDENENLKVSDFGLSALAESKRQDGLLHTTCGTPAYVAPEVINRKGYDGAKADIWSCGV VLYVLLAGYLPFHDSNLMELYRKIGKADFKCPNWFAPEARRLLNKILDPNPNTRISMAKIKESSWFKKGLTSKLIKPPEEDKRNVAPVDGDGSGPSRTCS LPREEKPEPSAKPPNVNAFDIISLSAGFDLSALFEDDIQRRETRFTSRHPASVIISRLEDAAKLLKMKVMKKEAGLLRMEVMKEGRKGLLSIDAEIFEVT PDFHLVEVKKSSGDTMEYQKIVRDGMQPALHDIVWVWQGEKEPQHEEQHPPPPEQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10042229 [exp]	0	1
AT2G35680			Phosphotyrosine protein phosph...		Lus10040174 [exp]	1.0	0.9589
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Lus10043381 [exp]	1.4	0.9346
AT5G56340		ATCRT1	RING/U-box superfamily protein...		Lus10013397 [exp]	3.5	0.9195
AT3G54840		ARA6, AtRABF1, ...	Ras-related small GTP-binding ...		Lus10017462 [exp]	5.5	0.9225
AT3G16910		AAE7, ACN1	ACETATE NON-UTILIZING 1, acyl-...		Lus10037735 [exp]	6.0	0.9047
AT4G19860			alpha/beta-Hydrolases superfam...		Lus10018310 [exp]	7.5	0.9223
AT3G54170		ATFIP37	FKBP12 interacting protein 37 ...		Lus10042086 [exp]	7.7	0.8928
AT1G70160			unknown protein		Lus10010721 [exp]	8.1	0.9196
AT2G46960		CYP709B1	"cytochrome P450, family 709, ...		Lus10026085 [exp]	8.1	0.9057
AT1G17080			Ribosomal protein L18ae family...		Lus10013712 [exp]	8.5	0.8981

Compare expression of checked genes

Lus10042229 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.