Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06950 908 / 0 ATTIC110, TIC110 ARABIDOPSIS THALIANA TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110, translocon at the inner envelope membrane of chloroplasts 110 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008580 [exp] 1275 / 0 AT1G06950 735 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110, translocon at the inner envelope membrane of chloroplasts 110 (.1) Lus10026424 [exp] 206 / 1e-59 AT1G06950 377 / 7e-123 ARABIDOPSIS THALIANA TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110, translocon at the inner envelope membrane of chloroplasts 110 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G154300 [exp] 998 / 0 AT1G06950 1258 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110, translocon at the inner envelope membrane of chloroplasts 110 (.1) Potri.019G127000 [exp] 993 / 0 AT1G06950 1278 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110, translocon at the inner envelope membrane of chloroplasts 110 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042231 pacid=23153594 polypeptide=Lus10042231 locus=Lus10042231.g ID=Lus10042231.BGIv1.0 annot-version=v1.0 ATGAAATGGTGGAAATCATGGAAATATAATTCGCAAGTTCTGAACTTCGGGATTTCTTTGGTTGTTTTGAATGTCAGGTATGGTGTGAGCAAAACAGACC AAGCGTTCACTGCAGAACTCTCAGATTTGTACTGCCGATTTGTTTCTTCTGTTCTGCCTCCTGGAAGCCAAGAACTTAAAGGCGATGAAGTTCAAACGAT AATCAACTTCAAGAAAGCTTTGGGTATTGACGATCCTGATGCAGCTTCCATGCATCTTGAGATTGGTAGGCGCATTTTCAGACAAAGGCTTGAAACTGGT GATCGTGATGGAGACGCAAAACAACGTAGAGTAGAAATTGCTATCCGTGATAATGCCCAAAGATTGTACAGTTCAAAACTTAGATCAGTTGGTAGAGATA TTGATGCAGAGCAACTGGTAAACCTTAGAGAAACACAAATTTCTTATGGACTTTCCGATGAGCTTGCGAAGGACTTATTCCAGAGCCACGCAAGAAATCT GATGGAGGAAAATATCTCAGTTGCACGTGATATACTGAAAACTAGATCAAGAGCACCCACTGGTTTGAAGGAGGCAGTTGGTGCAATTGATGTGGTACTG GCATTCAATGATAGACTTATTTCCTTCAAGGACCATGCAGATGCTGATCGATTTGCTCGAGGAGTTGGTCCAGTTTCTCTATTAGGTGGTGAGCATGATA CGGATAGAAAGATTGCTGACTTGAAGCTTCTATACAAAGCTTACGTCACAGATGCTTTATCCGGTGGTCGGATGGATGATAGTAAGGTTGCTTCACTAAA CAAGTTAAGGATTATATTTGGGTTGGGTACAAAAGAATCAGAGACAATTACGCATGAGGTTACCTCAAAAGTCTACCGGAAACGACTTGGACAAGCATTT ACCGGAGGTGATTTGGAGATGGCAGATAGCAAGGCAGCCTTCTTGCAGAATCTTTGTGAAGAATTGCGCGTTGATCCACTGAAGGCAAAAGAGGTTCATG CAGATATATACCGCCAGAAGCTTCAACAATGCTTAGCTGATGGAGAGCTCAGTGAGGCAGATGTCAAAAGTCTGCTACGAGTGAGAGTCATGCTCTGTAT TCCTGAAGAAACAGTTGAAGCGGCTCATACTGATCTATGCGGCACTTTATTTTCCAAGGCGGTCATGGATTTGATTGGCTCAGGTGCTGATGGTTACAGT GAGAGCGGTATGGAGGCTGTTAAAAGGGCTGCCCGTCAACTAAAGTTATCACGGGAGGCCGCTATGACTATTGCAAGCAGGGATGCCAAAAAGGTCCTAT TGACTTATGTAAAACGAGCTCGTGCAGCGGATGACCGCGAAAAGGCAGCTGAACACCTGAAGAAAATGGTTTTCTTCAATTATTATGTCTTGACTCGATT GGTTGCCGGTATTAAAGGGAAATCTGCAGATGATCAATCCGAAGAGCCTGTAAAGGAGGCAAAGAAACTAACTGAGGATGGATGGGAATCACTGGCATCG CTTAAGAAAATGAAGCCTAGCGGGGAAGTTCCTCCAGGAGCAGAGCCTGCCCAGACGGGGATAAACCTTAAAGATGACCTCCCTTTAAGAGACAGGACTG ACTTATTCAGAAAATACTTGATATTCTGCCTTACTGGTGAAGTCCAAGTTCTTCCCTTTGGTGCTTCGACCAAACCGGGCGAGTCGGAATTTGTATTCCT GACTCGGCTTGGAGAAATCTTGGGACTGACTGATGAGGAAATCGTGCCTGTGCACAAGGAAGTTGCAGAAATTACTTTCAAGAAGCAAGCTGAAGTAATT TTAGCCGACGGGAAACTCACTAAATCAAAGATGGATCAACTTGAAGATGTCCGAAAGCAACTTGGATATCCGGAAGAGTATGCTCAAAAGGCGATTAAGA ACATTACCAGCACAAAAATGGCTACTGTACTTGAAACTGCTATCGGTAAAGGGCAGCTCGATATAAGGCAGATGAGAGAACTGAAGAAGTCGAAGATAGA CGTCAACAACATGATCTCTGTGAAGCTTAGGGAGAGCCTGTTCAAAAAAACCGTGGACGAGATATTCTCATCCGGTACTGGAGAATTTGACGAGGTGGAA GTCTACGAGAGGTTGCCAGCAGACTTGAACATCAACACGGAGAAGGCCAAGGAGGTTGCTCATCAACTTGCACAGAACAGATTGTCAAACTCGCTGATTC AGGCTGTGTCCCAGTTGCGGCAAAGGAACCACACGGGAGCTGTTTCGGCCCTCAACAATATGATAGCGGCTGACAAAGCTGTTCCAGCTGAGGCACCATT GAATTGGGAAGTTGGACAGGAGTTGGATGTCCTTTACACCGTATATCTGAGGAGTGACCCACCGGCCGAAAAGCTGTCTCGGTTGCAGTATTTGCTGGGG ATAAGCGACTCTGAGGCTGATGCCCTGCGAGGCATGAAACATCAATCGCTCTCTCCAGGGGCAATAGAGGAGGAAGAGGAGAAGTTCGTGTTCTGA
AA sequence Show only first row Show all	>Lus10042231 pacid=23153594 polypeptide=Lus10042231 locus=Lus10042231.g ID=Lus10042231.BGIv1.0 annot-version=v1.0 MKWWKSWKYNSQVLNFGISLVVLNVRYGVSKTDQAFTAELSDLYCRFVSSVLPPGSQELKGDEVQTIINFKKALGIDDPDAASMHLEIGRRIFRQRLETG DRDGDAKQRRVEIAIRDNAQRLYSSKLRSVGRDIDAEQLVNLRETQISYGLSDELAKDLFQSHARNLMEENISVARDILKTRSRAPTGLKEAVGAIDVVL AFNDRLISFKDHADADRFARGVGPVSLLGGEHDTDRKIADLKLLYKAYVTDALSGGRMDDSKVASLNKLRIIFGLGTKESETITHEVTSKVYRKRLGQAF TGGDLEMADSKAAFLQNLCEELRVDPLKAKEVHADIYRQKLQQCLADGELSEADVKSLLRVRVMLCIPEETVEAAHTDLCGTLFSKAVMDLIGSGADGYS ESGMEAVKRAARQLKLSREAAMTIASRDAKKVLLTYVKRARAADDREKAAEHLKKMVFFNYYVLTRLVAGIKGKSADDQSEEPVKEAKKLTEDGWESLAS LKKMKPSGEVPPGAEPAQTGINLKDDLPLRDRTDLFRKYLIFCLTGEVQVLPFGASTKPGESEFVFLTRLGEILGLTDEEIVPVHKEVAEITFKKQAEVI LADGKLTKSKMDQLEDVRKQLGYPEEYAQKAIKNITSTKMATVLETAIGKGQLDIRQMRELKKSKIDVNNMISVKLRESLFKKTVDEIFSSGTGEFDEVE VYERLPADLNINTEKAKEVAHQLAQNRLSNSLIQAVSQLRQRNHTGAVSALNNMIAADKAVPAEAPLNWEVGQELDVLYTVYLRSDPPAEKLSRLQYLLG ISDSEADALRGMKHQSLSPGAIEEEEEKFVF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10042231 [exp]	0	1
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Lus10001425 [exp]	2.0	0.9569
AT5G63630			P-loop containing nucleoside t...		Lus10004017 [exp]	3.0	0.9460
AT3G13490		ATKRS-2, OVA5	OVULE ABORTION 5, ARABIDOPSIS ...		Lus10010317 [exp]	4.7	0.9387
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Lus10001057 [exp]	4.9	0.9515
AT1G68890			magnesium ion binding;thiamin ...		Lus10030915 [exp]	5.0	0.9441
AT3G03630		CS26	cysteine synthase 26 (.1)		Lus10020342 [exp]	6.0	0.9437
					Lus10021792 [exp]	7.5	0.9123
AT3G48500		PDE312, PTAC10	PLASTID TRANSCRIPTIONALLY ACTI...		Lus10005031 [exp]	7.7	0.9460
AT4G18130		PHYE	phytochrome E (.1)		Lus10004592 [exp]	7.7	0.9375
AT2G05990		ENR1, MOD1	MOSAIC DEATH 1, ENOYL-ACP REDU...		Lus10012019 [exp]	7.7	0.9399

Compare expression of checked genes

Lus10042231 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.