Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30320 447 / 9e-153 Pseudouridine synthase family protein (.1) AT1G76120 120 / 3e-29 Pseudouridine synthase family protein (.1.2) AT1G20370 87 / 6e-18 Pseudouridine synthase family protein (.1) AT1G34150 60 / 2e-09 Pseudouridine synthase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026423 [exp] 922 / 0 AT2G30320 459 / 5e-158 Pseudouridine synthase family protein (.1) Lus10021231 [exp] 129 / 5e-32 AT1G76120 584 / 0.0 Pseudouridine synthase family protein (.1.2) Lus10005641 [exp] 91 / 7e-19 AT1G20370 588 / 0.0 Pseudouridine synthase family protein (.1) Lus10039480 [exp] 44 / 0.0003 AT3G06950 411 / 6e-144 Pseudouridine synthase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G154200 [exp] 598 / 0 AT2G30320 486 / 2e-168 Pseudouridine synthase family protein (.1) Potri.005G247000 [exp] 84 / 6e-17 AT1G20370 560 / 0.0 Pseudouridine synthase family protein (.1) Potri.002G014400 [exp] 84 / 9e-17 AT1G20370 562 / 0.0 Pseudouridine synthase family protein (.1) Potri.002G061650 [exp] 55 / 7e-08 AT1G34150 474 / 1e-165 Pseudouridine synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0649 [flax] [poplar] PseudoU_synth PF01416 [flax] [poplar] PseudoU_synth_1 tRNA pseudouridine synthase
Representative CDS sequence Show only first row Show all	>Lus10042233 pacid=23153781 polypeptide=Lus10042233 locus=Lus10042233.g ID=Lus10042233.BGIv1.0 annot-version=v1.0 ATGCTTTCTATACGATGCTCGGTTTCCCCATGGCTTATCAAGACTTACCAGAACTCCTTCAAACAGAACTCCTTCAAACTTTCACTATTGGGATTACCCT CAAAAGGGAGTTTACTTGCTTCAGTACGCTGCTGTTGTTCCGAATTGTCTCCAATATCTGCTACTGAAGTTCGAACTGTGTCAACTCCTAGTCATCAGCA TCTTGGTGCCTCTGCTGGAAAATGGGTACCAATTCGTAAGAAAAAGGTTATTTTGCGAGTTGGTTATGTTGGAACGGACTACAGAGGTCTCCAGAAGCAA CACGATGAGCATTCATTGTCTACCGTTGAAGCAGAGCTGGAAAATGCCATATTCAAAGCTGGCGGGATTCTTGAAAGCAATTATGGACATTTGAACAAGG TTGCTTGGGCAAGAAGCAGCCGTACAGATAAAGGAGTCCACTCATTGGCAACAACGATTACAATGAAAATGGAGATACCAGAGACTGCATGGAAGGATGA TCCTTATGGCATTGCTCTTTCGAGAACTGTTAACTCTTACCTTCCGGATAGCATCAGAATTTTCAGCATCTTACCTGCACAGAAGAACTTTGATCCTAGA CTAGAGTGCAACATGCGTAGATATTCCTACCTTCTTCCTGCGGAGATTATTGGTATCAGAAGTCACTCTGATGCAGATGAAATCAGTGAGCACATATCAG ACTTCCGGAAGATACTAAATGCATTTGAGGGGGATCATCCTTTTCATAATTATACAATACGGTCAAAATACAGGAGCCAAATTCGTCGAAACACATCTCC TGAGGAAAATTATCATTTCTCAAAGAGAGACAGAGCCTTTATTCAGATAGGCGACCCTGTTAGTGAAGGGAGTGATGAAGAAGAAATGCCTGGGGTTGAT GAGATTGTTCAACTAGATAACTCAGAAACAATGCAAAATTTCGACCAAAATATTGAACCGGTGAAGGATCATCAAAGCTCAGGTGGTCAACTTGTTGCAA GATGGCTACATGAACCTGATGAGAGAGACAGAATAGGGGCTTCTCACTTCAGAAAGATTATCCGATGTTCATGTGGAGAGCTGGAGAAATCATCTGGATA TAATTTCGTTGAGATTTCTATATGGGGAGAGTCTTTCATGCTACACCAGATCCGAAAAATGGTTGGAACTGCAGTGGCAGTGAAACGTGATCTACTCCCA AGGGACATTCTAACATTATCATTAGCGAAATTCTCAAGGATTGTGCTTCCCCTTGCCCCGTCCGAAGTCCTGCTTTTAAGGGGCAATAGTTACTCGCTTA CGAGAAAATCCCGCGAAGGAGCGCGATCAGAAGTGCAGACGATGTCAGAGGCAGAAGAAATTCTCAAGGGAGTCGATGAATTTTACGTTGACAAATTGTT GCCGCAGGTATCCAAATTCTTGGACCCGTCTAGATCTCCATGGTTGGAATGGGTCGAGAAGCTAGATGAACACACGCACATTCCAGATGCAGAACTAAAT GAGGAAAGGCCAGCATTTCCACTCCATCCTCCAAGACACTGGTATATCAAGGAGCTAATTGTTATTGCGAGTTGCGCCTATAAGCTTGGTCTCGAGATTC CAACTGAGGTTATGTAG
AA sequence Show only first row Show all	>Lus10042233 pacid=23153781 polypeptide=Lus10042233 locus=Lus10042233.g ID=Lus10042233.BGIv1.0 annot-version=v1.0 MLSIRCSVSPWLIKTYQNSFKQNSFKLSLLGLPSKGSLLASVRCCCSELSPISATEVRTVSTPSHQHLGASAGKWVPIRKKKVILRVGYVGTDYRGLQKQ HDEHSLSTVEAELENAIFKAGGILESNYGHLNKVAWARSSRTDKGVHSLATTITMKMEIPETAWKDDPYGIALSRTVNSYLPDSIRIFSILPAQKNFDPR LECNMRRYSYLLPAEIIGIRSHSDADEISEHISDFRKILNAFEGDHPFHNYTIRSKYRSQIRRNTSPEENYHFSKRDRAFIQIGDPVSEGSDEEEMPGVD EIVQLDNSETMQNFDQNIEPVKDHQSSGGQLVARWLHEPDERDRIGASHFRKIIRCSCGELEKSSGYNFVEISIWGESFMLHQIRKMVGTAVAVKRDLLP RDILTLSLAKFSRIVLPLAPSEVLLLRGNSYSLTRKSREGARSEVQTMSEAEEILKGVDEFYVDKLLPQVSKFLDPSRSPWLEWVEKLDEHTHIPDAELN EERPAFPLHPPRHWYIKELIVIASCAYKLGLEIPTEVM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30320			Pseudouridine synthase family ...		Lus10042233 [exp]	0	1
AT3G07610		IBM1	increase in bonsai methylation...		Lus10002051 [exp]	2.8	0.8092
AT1G77670			Pyridoxal phosphate (PLP)-depe...		Lus10018962 [exp]	3.2	0.7505
AT3G58530			RNI-like superfamily protein (...		Lus10015980 [exp]	4.5	0.7748
AT4G16150	CAMTA		calmodulin binding;transcripti...		Lus10037738 [exp]	5.3	0.6946
AT2G45770		FRD4, CPFTSY	FERRIC CHELATE REDUCTASE DEFEC...		Lus10003676 [exp]	5.5	0.7591
AT3G46100		ATHRS1	Histidyl-tRNA synthetase 1 (.1...		Lus10023925 [exp]	7.3	0.7458
AT1G04790			RING/U-box superfamily protein...		Lus10023671 [exp]	8.5	0.7578
AT1G21650		SECA2	Preprotein translocase SecA fa...		Lus10029715 [exp]	15.4	0.7296
AT1G63610			unknown protein		Lus10016008 [exp]	15.8	0.7275
AT5G64320			Pentatricopeptide repeat (PPR)...		Lus10039056 [exp]	23.0	0.7018

Compare expression of checked genes

Lus10042233 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.