Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30300 102 / 4e-26 Major facilitator superfamily protein (.1) AT5G45275 86 / 4e-20 Major facilitator superfamily protein (.1) AT1G31470 83 / 3e-19 NFD4 NUCLEAR FUSION DEFECTIVE 4, Major facilitator superfamily protein (.1) AT3G01630 79 / 1e-17 Major facilitator superfamily protein (.1) AT4G19450 77 / 5e-17 Major facilitator superfamily protein (.1) AT2G16660 60 / 4e-11 Major facilitator superfamily protein (.1) AT4G34950 55 / 2e-09 Major facilitator superfamily protein (.1) AT1G80530 52 / 2e-08 Major facilitator superfamily protein (.1) AT5G50520 44 / 1e-05 Major facilitator superfamily protein (.1) AT5G50630 44 / 1e-05 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026422 [exp] 214 / 2e-67 AT2G30300 379 / 5e-126 Major facilitator superfamily protein (.1) Lus10015469 [exp] 109 / 2e-28 AT2G30300 396 / 5e-133 Major facilitator superfamily protein (.1) Lus10019941 [exp] 106 / 2e-27 AT2G30300 307 / 1e-98 Major facilitator superfamily protein (.1) Lus10015470 [exp] 100 / 2e-25 AT2G30300 351 / 2e-115 Major facilitator superfamily protein (.1) Lus10033270 [exp] 93 / 6e-25 AT5G45275 178 / 4e-54 Major facilitator superfamily protein (.1) Lus10034738 [exp] 67 / 1e-13 AT4G19450 691 / 0.0 Major facilitator superfamily protein (.1) Lus10025053 [exp] 57 / 3e-10 AT4G34950 793 / 0.0 Major facilitator superfamily protein (.1) Lus10034491 [exp] 57 / 5e-10 AT4G34950 788 / 0.0 Major facilitator superfamily protein (.1) Lus10001678 [exp] 56 / 2e-09 AT1G80530 649 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G154000 [exp] 135 / 4e-38 AT2G30300 380 / 4e-127 Major facilitator superfamily protein (.1) Potri.019G126700 [exp] 131 / 1e-36 AT2G30300 427 / 4e-145 Major facilitator superfamily protein (.1) Potri.013G084000 [exp] 84 / 1e-19 AT2G30300 241 / 2e-73 Major facilitator superfamily protein (.1) Potri.001G128200 [exp] 84 / 2e-19 AT4G19450 774 / 0.0 Major facilitator superfamily protein (.1) Potri.003G105600 [exp] 82 / 9e-19 AT4G19450 734 / 0.0 Major facilitator superfamily protein (.1) Potri.004G173400 [exp] 61 / 2e-11 AT4G34950 682 / 0.0 Major facilitator superfamily protein (.1) Potri.009G132700 [exp] 60 / 4e-11 AT4G34950 661 / 0.0 Major facilitator superfamily protein (.1) Potri.006G060900 [exp] 56 / 1e-09 AT1G80530 632 / 0.0 Major facilitator superfamily protein (.1) Potri.003G012300 [exp] 52 / 3e-08 AT1G80530 650 / 0.0 Major facilitator superfamily protein (.1) Potri.001G204700 [exp] 45 / 5e-06 AT1G80530 625 / 0.0 Major facilitator superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042234 pacid=23153714 polypeptide=Lus10042234 locus=Lus10042234.g ID=Lus10042234.BGIv1.0 annot-version=v1.0 ATGGCACTAATGGCATCAGCATTTTTGTTACTTGTCACAACTCGAACCCCCCAATATCACCTCAGCCTCTACATAGCCACAGGCATCATATCGGTGAGCA CAGGGGCAATAACTTCGATCGCTGTTTCAACAACCACCCAACTCTTCGGCACCACCAGCTTCAGCATCAACCACAACGTTGTGGTCTCCAACATCCCTCT TGGCTCTTTCGCTTACGGCTATCTGGCCGCCTTCATTTATCGCAGGAGTAGTGCCGTTGGTGGCGTTGGTGATGGAGAAGGGATCAAGTGTATGGGTGTG GAGTGTTATCGAGATACGTTTGTGATTTGGGGGTCGCTTTGTGGGGTTGGTGCGGTTCTTGCTCTCGTTCTTCATTGTAGGATGATGAGGGTAAGGCGGA GGAAGAGGGACGGTGGTGAGTTTTTTGTCGGAGGATTGACTGGTTGA
AA sequence Show only first row Show all	>Lus10042234 pacid=23153714 polypeptide=Lus10042234 locus=Lus10042234.g ID=Lus10042234.BGIv1.0 annot-version=v1.0 MALMASAFLLLVTTRTPQYHLSLYIATGIISVSTGAITSIAVSTTTQLFGTTSFSINHNVVVSNIPLGSFAYGYLAAFIYRRSSAVGGVGDGEGIKCMGV ECYRDTFVIWGSLCGVGAVLALVLHCRMMRVRRRKRDGGEFFVGGLTG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30300			Major facilitator superfamily ...		Lus10042234 [exp]	0	1
AT1G79510			Uncharacterized conserved prot...		Lus10001766 [exp]	4.9	0.9127
AT3G59010		PME61, PME35	pectin methylesterase 61 (.1)		Lus10025510 [exp]	8.0	0.9067
AT5G53390			O-acyltransferase (WSD1-like) ...		Lus10039843 [exp]	10.1	0.9026
AT5G10770			Eukaryotic aspartyl protease f...		Lus10038732 [exp]	11.0	0.8926
AT2G30300			Major facilitator superfamily ...		Lus10026422 [exp]	12.4	0.8907
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10015138 [exp]	16.6	0.8881
AT4G09350		NdhT, CRRJ	NADH dehydrogenase-like comple...		Lus10029740 [exp]	19.3	0.8860
AT5G57800		CER3, FLP1, YRE...	FACELESS POLLEN 1, ECERIFERUM ...		Lus10008895 [exp]	20.3	0.8823
AT3G24420			alpha/beta-Hydrolases superfam...		Lus10017735 [exp]	21.4	0.8830
AT3G18280			Bifunctional inhibitor/lipid-t...		Lus10017616 [exp]	22.1	0.8276

Compare expression of checked genes

Lus10042234 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.