Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30270 137 / 6e-41 Protein of unknown function (DUF567) (.1) AT5G01750 73 / 6e-16 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) AT3G11740 64 / 1e-12 Protein of unknown function (DUF567) (.1) AT2G14560 53 / 1e-08 LURP1 LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA, Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) AT3G16900 46 / 3e-06 Protein of unknown function (DUF567) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026421 [exp] 329 / 2e-116 AT2G30270 162 / 1e-50 Protein of unknown function (DUF567) (.1) Lus10014021 [exp] 70 / 1e-14 AT5G01750 202 / 6e-66 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10002477 [exp] 67 / 9e-14 AT5G01750 218 / 5e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10001255 [exp] 67 / 9e-14 AT5G01750 218 / 5e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10019896 [exp] 57 / 5e-10 AT5G01750 169 / 3e-53 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10022754 [exp] 56 / 1e-09 AT5G01750 214 / 3e-70 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10009094 [exp] 54 / 5e-09 AT5G01750 150 / 1e-45 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10025253 [exp] 54 / 6e-09 AT5G01750 169 / 4e-53 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10009092 [exp] 51 / 7e-08 AT5G01750 161 / 7e-50 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G126300 [exp] 188 / 5e-61 AT2G30270 159 / 8e-50 Protein of unknown function (DUF567) (.1) Potri.016G130400 [exp] 60 / 4e-11 AT5G01750 181 / 3e-57 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G130700 [exp] 57 / 7e-10 AT5G01750 209 / 2e-68 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131701 [exp] 56 / 1e-09 AT5G01750 201 / 2e-65 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131850 [exp] 54 / 9e-09 AT5G01750 213 / 3e-70 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G130500 [exp] 51 / 6e-08 AT5G01750 218 / 6e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131800 [exp] 51 / 8e-08 AT5G01750 213 / 3e-70 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131100 [exp] 49 / 3e-07 AT5G01750 154 / 3e-47 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131400 [exp] 47 / 2e-06 AT5G01750 147 / 3e-44 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131300 [exp] 45 / 9e-06 AT5G01750 143 / 7e-43 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [flax] [poplar] Tubby_C PF04525 [flax] [poplar] LOR LURP-one-related
Representative CDS sequence Show only first row Show all	>Lus10042235 pacid=23153647 polypeptide=Lus10042235 locus=Lus10042235.g ID=Lus10042235.BGIv1.0 annot-version=v1.0 ATGGAGGATGGCAAAGACTCACCTCCCGTCGTCGCCCATGCAGCCGCTTCTCAGATTCCGGTGGACTTGTTTGTCTCCAAGAAGCATCCCGGAGTTCCAC AGGGAAGTCTTGGTTTCGCCGATTCCTCTGGGGATGAACTCTTTCGCGTAGCTCCACTTCTTTCCCCCAGAGCATGGAAATCGAGACAGTGCAAGAAGCT GATTCTCAATTCTTCTGGTAGTCCCTTGATTTCCTTGCACCGCCTCGATAAGGGATCATGGGAAGTTTTTGAAGGAGGTGAGGAGGCAGAGAAGGAGATG CTATTCAGAGTCCAAAGGACGGTGAACAAGCTCTGCAGAACTGAGTTTGAGGTGTTCCTTGCCGGAGAGAGCTCACAAGATCAGTCGAAACCCGACTTCA AGGTGAAAGGGTGTTGCTTTCAACGATCCTGCACCATCTATGGTGGTGATTCCATTGTAGCTCAGACTAGTCTGATGTACAAGCTTCACGAGGTTCATGC GAGTAGGAGCAAATTCCGGCTGACTGTGTTTCCAGGGTCCATAGATCACGCACTGGTGGTGGCTTTGGTAGTGGTATTCTTGTCCTGA
AA sequence Show only first row Show all	>Lus10042235 pacid=23153647 polypeptide=Lus10042235 locus=Lus10042235.g ID=Lus10042235.BGIv1.0 annot-version=v1.0 MEDGKDSPPVVAHAAASQIPVDLFVSKKHPGVPQGSLGFADSSGDELFRVAPLLSPRAWKSRQCKKLILNSSGSPLISLHRLDKGSWEVFEGGEEAEKEM LFRVQRTVNKLCRTEFEVFLAGESSQDQSKPDFKVKGCCFQRSCTIYGGDSIVAQTSLMYKLHEVHASRSKFRLTVFPGSIDHALVVALVVVFLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30270			Protein of unknown function (D...		Lus10042235 [exp]	0	1
AT4G31720		STG1, TAFII15, ...	TBP-ASSOCIATED FACTOR 10, SALT...		Lus10034375 [exp]	3.3	0.9222
AT1G07745		SSN1, ATRAD51D,...	SUPPRESOR OF SNI1, homolog of ...		Lus10015220 [exp]	4.2	0.9165
AT5G13240			transcription regulators (.1)		Lus10013491 [exp]	8.9	0.8969
AT5G63080			2-oxoglutarate (2OG) and Fe(II...		Lus10001249 [exp]	9.5	0.9059
AT3G27340			unknown protein		Lus10022323 [exp]	11.4	0.8847
AT4G32440			Plant Tudor-like RNA-binding p...		Lus10018749 [exp]	12.0	0.9086
AT5G55810		ATNMNAT	nicotinate/nicotinamide mononu...		Lus10023862 [exp]	12.0	0.9020
AT4G33000		SCABP8, ATCBL10...	SOS3-LIKE CALCIUM BINDING PROT...		Lus10015630 [exp]	12.1	0.9172
AT5G20090			Uncharacterised protein family...		Lus10038250 [exp]	13.4	0.9126
AT1G15860			Domain of unknown function (DU...		Lus10026216 [exp]	14.4	0.9007

Compare expression of checked genes

Lus10042235 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.