Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58410 1519 / 0 HEAT/U-box domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026420 [exp] 3167 / 0 AT5G58410 1728 / 0.0 HEAT/U-box domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G126000 [exp] 2016 / 0 AT5G58410 1781 / 0.0 HEAT/U-box domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042236 pacid=23153832 polypeptide=Lus10042236 locus=Lus10042236.g ID=Lus10042236.BGIv1.0 annot-version=v1.0 ATGGGGAAGCAAAAGGGAGATGGCGGCAGGAGCAAGAACCGACCTTCTAGCAGCAGTCTAGCAGCTTCTCTGTTGCCTTCGGGTTCTTCTGCAGCAGCCG TGGGATTTGGCGGCTATGTCGGGAGCTCTCGCTTTGATGTTCCAGTTTCAGTCGACGACTCTGCTCCTTTTCTGGACGTGGACAGTGAAGTTGCTCAACA CATAAAGAGGCTCGCGAGGAAGGATCCCGTTACCAAGCTTAAAGCACTGCAAGCATTGTCTGCTCTGTTCAAAGTTAAGTCTGGAAAGGATATGGCGTTG ATTATACCGCAATGGGCCTTTGAATATAAGAGGTTGCTGATGGACTACAATAGAGAAGTTCGGAGGGCAACGCACGAAACCATGACCAATCTTGTTGTTA CTGTTGGGCGAGATATAGCTCCACATCTCAGGACTTTGATGGGACCGTGGTGGTTTTCACAATTTGATCCAGTTTCTGAAGTTTCTCTTTCTGCAAAGCG ATCATTGCAGATGGTCAATAATCCTGCTGCTTACTTACTGTTCCTCATGTTTAATCAGGCAGCATTTCCAGCACAAGAGAAAAGACTAGATGCTTTCATT TTATGCGCAACGGAGATATTTATGTATTTGGAAGAAAATTTGAAGTTGACACCACAAAGTCTGTCAGGTAAAGCTGTGGCTTTGGACGAATTGGAGGACA TGTACCATCAGGCAGTCGCTTCCACTTTGCTCGCGTTAGCAACACTTATTGATGTTTTATTTAGCTTGCAATCTGAAACAGCTGGCCTGGAAAACGTTGC AGCTGAACCAAGAAATGCCTCAAAGGCTAGGGCAACTGCTATTTCTTTTGCTGAGAAGTTGTTCTCTGGGCACAAATATTTTCTAGACTTTCTTAAGTCA CAAAACCCAGCAGTTAGGACAGCTGCATATTCTACACTGAAGAGCTTCATTAAAAGTGTTCCTCATGTTTTCAACGATCAAAATATGAAAACAGTAGCTG TTGCTGTACTTGGTGCTTTCCAAGAGAAGGATCCTGTTTGTTATTCATCAATTTGGGACACAGTATTATTATTTTCGAAAAGATTCCCTGACAGCTGGAC GATAATTAACGTTCAAAAGAATTTCCTCGGCCGGTTTTGGAATTTCTTAAGGCATCAATGTTTTGGTTCGCAGCAAGTCTCTTATCCTGCATTGATTCTT TTTCTGGAGGCCGTGCCTTCCAATGTAGCAGCAGGAGAGAGGTTCTTCCTTGACTTTTTCCAAAACCTATGGGATGGCAGGAACCTGTTGCGTTCAGCTG TAGCTGACCGTTTGGCATTCTTCAAGGCCTTTAGGGAGTGCTTTCTTTATGCACTGCAGAATGCACCCAGGTATTGCAATGGGGTTGATTCTATACTGAA ATTTCGAGATACCCTTGTTGAAGAAGTCCTCGTGCACCTTCTGTGGCATGATTACCTTTTTTCTGGAGGATCCAGTGGTCAAGATGCTGGGTCTTCTGTT AAGAACACAACAGGGTCAGTAAACCTGAAATATCCTTGGAGTTACTTGCAAGAATTGGGGAAGTGCATTACAGAAATTCTTTCTGAAAGCTATTTAATAG AATATGATGTGCTTTCAACTTACTCTGCGGCATTTCGGGAGGATTCTGTAAGCCTGTTTCAGAAAACAGTAAATGTTTCAGAAAGAGCAGAATGTGTTGA TCGAATCATCAAGTTTCTGTCATTACTGGAGCAGCATTCAGTTCAGAAAGGTGAAGATTGGCCCTTGGTTCAGTTAGTAGGACCAATGTTGGCCAACTCA TTCCCATTGATAAAATCTTTTGATGTTCCAGATGGCATTAAGCTTCTATCAACGGCAGTTTCAATTTTTGGTCCACAAAGAACTCTCCACCAACTTTTCA TCTGTAGCAATGAGAGTCCTTGCAGCGCCAATCCTGGTGAAAAGGACAAGGAGTTGGCCCCATTCATGCAAGTATTCAGCGAGACATTTGTTCCATGGTG TTTATCTGGTCACAGTTCCTCAATCAGTAGTCGACTTGATTTGTTACTTGAATTGCTAAATGATGAATCTTTTCCCAAGCAATGGGACATAATTGTTTCA TATGTGATTAATCAAACAAATGGAAGTGGTAGAATCGAGGCTGGGACCCTGGAGTCAGAAAGGTTGGTTTCACTGGCAATGCTCTTGGATAAAGCAAGAG TTGAAATGAAAAGCAAGACACTGACCAGAACTTCAGCTCACCAGCACTGGTATAATCCACAGGCTTGGTTTCACGGGCTTCTAGAATCGGCTGCAGTTCT TGTTGCCTATTCTCCAATCACATTCACACGTTCTGCTTCTCAGTTTCTGTGTGCTGTTCTTGGGGGACCATGCAATGACAATCAAATATTTTTCGTGTCA AAAAATATAATCACATTGATTGCTAAAGCATTCAACAGAAGATTTCTCTCTTTCATGGCCAAGTCCTCTTTTGAATCAGTTAGAAATTCAGTTTCTGTAT TAACCGAAGAGATGGATTATGCTGAAATTGGCAATGACAGCGCTGTTAACATAATGGAGATGACTCAATTTTCACTCGATGTACTTAGTGATAGGTTCTT TTGCCTGAAATCAATATCAGAGGACATTGGACTAGTTTCAGGGATCATGGCTTCCGTTTTCATCATTAACTGGGAGTTCGAAATGATGACAATGGAAGAA CATGCTATTAATGATGAATCAAATGAGAAGATGATCGGAAGGAGAGAAGTTTGCCAAGTCGCTCGTGATCTTTGCCTTAAACTAAAGGATGCATTCTGTG AAAGCCTTCCGGCGAACATTCGAATGCAGCTGGGAGACCTTCTGGTTCAGTCTGTCAGGTTGGTCGTTCTTAGGGAATGTAAGCTGAGTGCTGGTGTGAT TACTTCTTTGGGCTGCTCTTGGATGGAGGAACTCCTTGCATGTCTGTGCATTGATCAACCTGAGGAACAGAATTTACTTGACCAGCTGTTAAGCAAGGAT CAGACTTGGCCTTCATGGATCGTTGCAGATTTTACGGTTGGAAGTACCTCAAATAAGTTAAATATGGAAAACGATACATACGTATCTGGCAATGTCAAGT TTGTTTCTTTAATTGACAAGCTTATCAAGAAGGTCGGAATCAATAGAGTTCTATGCCTTGATGATGATGGCGATGCCTCATTGAAGGATCCAATGAAAGA CGAGAGTACTACTCGAGCATGGCTTGCAGCTGAAATGTTATGTACATGGAATTGGATAGAAGGTGCTGTTGTTGATTCTTTCTTACCTTCACTGGTTCTA CCTGCCCAAGGTGGGAATTATCCTCGTGTACACAGTTTACTAGATGACATCTTGGACATCCTGCTCAATGGTGCTCTTGTTCAAGGAGACAGAGGCAGAG TAAGATTGTCAAATGTGTGGCCTGCTTCGAATGACGAGCTAGGAAAAATTGAAGAACCATTCTTAAGGGCTTTGTTAACTTTGGTTGTTACTTTGTTTAA TGATGGTATATGGGGAAGAGACAAAGCTCTGGAGCTGTTTGAGCTTCTCATAACAAAGCTGTACATTGGAGAATCAGTAAACACCAATTGCTTAAAAATT CTTCCCTCGATCATTAATGTTCTTATACAATCGGTATGCCAGAGAGGTAGTACACCTTCCGAATCTAGCCAAAATAATGAAGTTGACATGCTAGATCGAA AGCTGCAGGATATGCTCAAAGATTGGTTGTATAGGACCCTCATGCTTCCACCTTTACTTGAGTGGACATCTGGACAAGATAAGGAAGAATGGGTTGAGCT AGTTATTACTTGTTACCCTTTGAGCTTAAGCCCCTGCTCCAAATCATTGAAGTTGGAGAGAGACATTAGCTTGGAAGAGCAGACACTTTTACTGGAATTA TTCCGCAAACAGAAACACAGGACAATACCAGTAGCTAATCAACTTCCAGTTGTTCGGATATTGCTTTCGGAGTTGCTAGTCATTTCTGTCGGCTATTGCT GGAAACAATTTGCGGAGGATGATTGGGAGTTCTTTTTCTCACAGATTAGGGCCTCTATTCAGTCAGTGGTTGTTATAATGGAAGAAAGTACAGAAAGTGT GAATGATATCTTTTCTGATGGCTCAGCCTCTGAAAGGCTGGATGTTTTGAAGAAGCTGGATCAGCTTAGTTTGATTTCCGACGATCCTACTGTAAATATT GCTAGCAATGCCTTGGCTTCTTTCTCACTGTTTTATGGGGCTTTGGGGCTCCAGTCAGGTAAGGATGATTCAAACTCAATCGTTCTGGAGAGATGGAGTT CGCCAGTTGGTAGACTGCAAGAAGCTATTCTTCGACTGTTTTTCTGTACTGGAATTTCTGAAGCTATTTCAAGTACATACAGTGATGAAGCTGCATCTAT TGTAGCGAAGTCTCGGTGTTGTAATCCCTTATTTTGGCAGTTGGTCGCTTCAAATATTATTAACTCTTCTCCACAAGCTAGAGAAAGAGCAGTGAAATCT GTTGAATTTTGGGGGTTGAGCACTGGGTCAATCAGTTCCTTGTACACGATTTTGTTTTCCTCTATACCAATCCCAGCTTTGCAGCTTGCTGCCTATGTTA TTCTCTCCACAGAGCCTGTTTCACAACTGGCTGTGGTGAATGATTCCAATCGTGCGACAGATGATGTTTCTGGTAATGATCAAGAAACTTCTACTCTCGA ATTGTCATCAGAAAAAAATGTGAACTTGCCAGAGGAACTATCCCTCAGAATTGAGAATCTGTCCTATGAGGTGCTTGAAATGGATTTGATGGGCCATGAA CGGGTAAATCTATTTCTTTCTTGGTCGTTATTGCTGTCACATCTGGGGTCATTACCAACAACATCTCCTGCTAGAGAGCAATTAGTTCAGTATGTCCAAG GTTCTGGTAATTCAGTGATATTAGATTGCATCTTCCAGCATATTCCTCTCGAAGAGTTCTCCTCACAGATACTTAAGAAGAAAGACGCTGAGCTTCCTCC TGAAGTGTCGGAAGCTGCAAGGGCAGCAGCTAGGGCCATAAATACTGGCTCATTATTGTTTGCCCTCGAATCGTTATGGCCAATTGGACCAAACAACATG GCTGCCCTTGCTGGAGCATTATATGGTTTCATGCTTTGTGTTCTTCCTGCTTATGTTAGAAGATGGTTTTCTGAATTACGTGACCGTTCAATGTCATCTC TTATTGAATCATTCACACGATCATGGTGCAGTCCTGCTCTGATTGTTAATGAACTCTCTCAGATTAAAAAAGCCGACTTTGCTGATGAGATCTTTTCAGT CAGTGTGAGCAAATCTGCCAATGAAGTTGTTGCTACATATACAAAAGAAGAGACAGGAATGGATCTAGTTATCCGTCTTCCTGCAGCGTATCCACTACGT CATGTTGATGTTGATTGTATGAGAAGTCTGGGCATAAGCGAGGTTAAGCAAAGGAAATGGTTAATGTCGATGACAATGTTTGTTCGCAATCAGAATGGAG CTTTAGCCGGAGCAATACGAACATGGAAGAGCAATTTGGATAAAGAGTTCCAAGGTGTGGAGGAGTGCCCAATTTGTTACAGCGTCATCCACACAGACAA CCGCAGCCTCCCTCGACTTGCTTGCCGAACTTGCAATCTCCCTTCTGATGTAGAGACTCGGAGTATAGCAAGTCTTAGGAAATTTTGTCGCAGTTACATT GCTGTTCTGTCAACCGTGGAATATCCAACAAGCTTGATACTTGAAGTGTTTAGTTACCAGGCTTATTTCACTGGTTTCAGGGCCGTTTGGCAGACTGAGC ACGGCGTGGGTCAGTAA
AA sequence Show only first row Show all	>Lus10042236 pacid=23153832 polypeptide=Lus10042236 locus=Lus10042236.g ID=Lus10042236.BGIv1.0 annot-version=v1.0 MGKQKGDGGRSKNRPSSSSLAASLLPSGSSAAAVGFGGYVGSSRFDVPVSVDDSAPFLDVDSEVAQHIKRLARKDPVTKLKALQALSALFKVKSGKDMAL IIPQWAFEYKRLLMDYNREVRRATHETMTNLVVTVGRDIAPHLRTLMGPWWFSQFDPVSEVSLSAKRSLQMVNNPAAYLLFLMFNQAAFPAQEKRLDAFI LCATEIFMYLEENLKLTPQSLSGKAVALDELEDMYHQAVASTLLALATLIDVLFSLQSETAGLENVAAEPRNASKARATAISFAEKLFSGHKYFLDFLKS QNPAVRTAAYSTLKSFIKSVPHVFNDQNMKTVAVAVLGAFQEKDPVCYSSIWDTVLLFSKRFPDSWTIINVQKNFLGRFWNFLRHQCFGSQQVSYPALIL FLEAVPSNVAAGERFFLDFFQNLWDGRNLLRSAVADRLAFFKAFRECFLYALQNAPRYCNGVDSILKFRDTLVEEVLVHLLWHDYLFSGGSSGQDAGSSV KNTTGSVNLKYPWSYLQELGKCITEILSESYLIEYDVLSTYSAAFREDSVSLFQKTVNVSERAECVDRIIKFLSLLEQHSVQKGEDWPLVQLVGPMLANS FPLIKSFDVPDGIKLLSTAVSIFGPQRTLHQLFICSNESPCSANPGEKDKELAPFMQVFSETFVPWCLSGHSSSISSRLDLLLELLNDESFPKQWDIIVS YVINQTNGSGRIEAGTLESERLVSLAMLLDKARVEMKSKTLTRTSAHQHWYNPQAWFHGLLESAAVLVAYSPITFTRSASQFLCAVLGGPCNDNQIFFVS KNIITLIAKAFNRRFLSFMAKSSFESVRNSVSVLTEEMDYAEIGNDSAVNIMEMTQFSLDVLSDRFFCLKSISEDIGLVSGIMASVFIINWEFEMMTMEE HAINDESNEKMIGRREVCQVARDLCLKLKDAFCESLPANIRMQLGDLLVQSVRLVVLRECKLSAGVITSLGCSWMEELLACLCIDQPEEQNLLDQLLSKD QTWPSWIVADFTVGSTSNKLNMENDTYVSGNVKFVSLIDKLIKKVGINRVLCLDDDGDASLKDPMKDESTTRAWLAAEMLCTWNWIEGAVVDSFLPSLVL PAQGGNYPRVHSLLDDILDILLNGALVQGDRGRVRLSNVWPASNDELGKIEEPFLRALLTLVVTLFNDGIWGRDKALELFELLITKLYIGESVNTNCLKI LPSIINVLIQSVCQRGSTPSESSQNNEVDMLDRKLQDMLKDWLYRTLMLPPLLEWTSGQDKEEWVELVITCYPLSLSPCSKSLKLERDISLEEQTLLLEL FRKQKHRTIPVANQLPVVRILLSELLVISVGYCWKQFAEDDWEFFFSQIRASIQSVVVIMEESTESVNDIFSDGSASERLDVLKKLDQLSLISDDPTVNI ASNALASFSLFYGALGLQSGKDDSNSIVLERWSSPVGRLQEAILRLFFCTGISEAISSTYSDEAASIVAKSRCCNPLFWQLVASNIINSSPQARERAVKS VEFWGLSTGSISSLYTILFSSIPIPALQLAAYVILSTEPVSQLAVVNDSNRATDDVSGNDQETSTLELSSEKNVNLPEELSLRIENLSYEVLEMDLMGHE RVNLFLSWSLLLSHLGSLPTTSPAREQLVQYVQGSGNSVILDCIFQHIPLEEFSSQILKKKDAELPPEVSEAARAAARAINTGSLLFALESLWPIGPNNM AALAGALYGFMLCVLPAYVRRWFSELRDRSMSSLIESFTRSWCSPALIVNELSQIKKADFADEIFSVSVSKSANEVVATYTKEETGMDLVIRLPAAYPLR HVDVDCMRSLGISEVKQRKWLMSMTMFVRNQNGALAGAIRTWKSNLDKEFQGVEECPICYSVIHTDNRSLPRLACRTCNLPSDVETRSIASLRKFCRSYI AVLSTVEYPTSLILEVFSYQAYFTGFRAVWQTEHGVGQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58410			HEAT/U-box domain-containing p...		Lus10042236 [exp]	0	1
AT1G61140		EDA16	embryo sac development arrest ...		Lus10011211 [exp]	1.0	0.8833
AT1G07910		ATRNL, RNL, AtR...	ARABIDOPSIS THALIANA RNA LIGAS...		Lus10017071 [exp]	2.2	0.8447
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Lus10043135 [exp]	3.7	0.8408
AT3G10650		AtNUP1	unknown protein		Lus10008959 [exp]	5.5	0.8626
AT1G14780			MAC/Perforin domain-containing...		Lus10034586 [exp]	5.5	0.8185
AT1G64550		SCORD5, AtGCN20...	susceptible to coronatine-defi...		Lus10032431 [exp]	5.7	0.8609
AT5G49930		EMB1441	embryo defective 1441, zinc kn...		Lus10037821 [exp]	7.2	0.8458
AT5G07980			dentin sialophosphoprotein-rel...		Lus10040532 [exp]	7.5	0.8385
AT5G12400			DNA binding;zinc ion binding;D...		Lus10014918 [exp]	8.4	0.8207
AT3G05090		LRS1	LATERAL ROOT STIMULATOR 1, Tra...		Lus10004142 [exp]	10.4	0.8426

Compare expression of checked genes

Lus10042236 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.