Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026417 [exp] 355 / 5e-114 ND / Lus10026416 [exp] 300 / 1e-94 AT5G52410 42 / 0.001 unknown protein Lus10004306 [exp] 210 / 7e-61 ND / Lus10016424 [exp] 208 / 3e-58 ND / Lus10019211 [exp] 198 / 2e-56 ND / Lus10019691 [exp] 197 / 2e-54 ND / Lus10029181 [exp] 189 / 1e-51 ND 39 / 0.008 Lus10003449 [exp] 182 / 2e-49 AT2G02360 102 / 4e-24 phloem protein 2-B10 (.1) Lus10000475 [exp] 183 / 5e-49 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042237 pacid=23153613 polypeptide=Lus10042237 locus=Lus10042237.g ID=Lus10042237.BGIv1.0 annot-version=v1.0 ATGGCGCCCTTCGATTTCAAGTCCAACAATCACTTTGTTGCTTCCTCCGACGGAACTACTCTTCAAGTCCACGAGTTGACTGCCAATCATATGGTTCATC CTCTTTCCATCCGTAAGGCTCATTGGAAGCAAGTTGCCAACATCAATACGATCAGCCTCGAAGATGACCCGGATGAGCAAATCTCTTATGATGGGCTGCT GTTCTTCGATGGTTATGGCAGAATCGAGGGAACCAAAGAGTTGACCATGCTAGCCCAGCATCTGAAGCGCCTACGCTTGTTGGTCAACCCTGAAGGTTAC TGTTTTCAGGAATCAGTGGAGCTTGCGGATTATGCAGATTTCGGGATTCACTATCTTCGACTCAATGATCTGTTCAGCTGGCCCCATCATGGGGTTCATT TGGCAACGACCTCCTTGTGGAGCCGGTCGGAGTTGAAATATCAGATGCCGAAACCGAAGCCAACGACGACTGCTGATGATCATCATGGTCATGGGATTAA TTACTTGCAGAAGAAGTTAGAGGAATTGAAAAGGCTGTTGAAAGAGAAAGAGGATGAGCTGGAGAAGGCGGATGAGGTGAAGGATGAAGAATTGGAGAAG TTAAGGAAGGAGAAAGATGAAGAGATAAGAGTGGTGAGGAAGAAGAAGGATGATGAGAAGGTTAAAGCAAGAAAAGCAGAGGAAGCTCTGGAGAAGCTGA AAGTTGAAATGGAGGATTCGAAAGAGTCGAAAGATGAAGAGATGGAACAGTTGAGAAAGCAGTTGAAAAGGAAGGATGAAGAAATGAGGATTCTTAAAAG GGAGAAGGATAAATATAAGGAAACAAATGCGAAGAGGATCGAGGAACTCGAGAAGCTGAAAGAGGAGATGGAGGATGCGAACGAGGAGCTGCGAAGGATT CTAAAAGTTCACGAGCAAAATGGCAAAGTGGATGTAAAATCAGCTAGGAAGATTGCAGAACTGGAGAAGCAGAAGAATGAGGAGTTGGAGAGGATAACAC GAGAGAAAAATGACGAAATTGCACGAATCAAGAAAGACTATTTAGATGAAAAGTCTAAACTGCAAAATATAATTCAAGAGAACAACGAGGAGCTCAAAAA AATAACTCAAGAGAAGAATGCGGAGGTGGAGAGGATAACACGGGAGAAAAATAAGGAGATGGAGAGGATAACACGAGAGAAAAATGACGAAATTGCACGA ATCAAGAAAGACTACATGGAGGAGAATTCTAAGCTGCAAAAGATAATTCAAAAGAACAACGAGGATCTCAAAAAGATAACTCAAGAGAAGAATGAGGAGC TGCAGACGATAACTCGAGAGCGAAATGATGAAATTGCACATAACAAAAAAAATTTGGAGGAGCAGAGTTTTAAGTTGGAGAAGATAATTCAAGAAAAAAA TAAGGAGTTGCAGACGATAACTCAAGAGAAAAATGATGAAATTGCACATATTAAGAAAAATTTGAAGGAGCAAGGTTCTAAGTTGGAGAAGATAGTTCAA GAGAAGAATGAGGAAATGCAAAAAATAACTCGAGAAAAAAATAATGAAATTGCACGCATCAAAAAAAATTTGGAGGAGCAGAGTTCCAAGTTGGAGAAGA TAATTGAAAAAAAGAATGAAGAGCTACAGAAGATAATTCAAGAAAAAAATGATGAAATTACAAGAATCAAAAAAAATTTGGATGAGCAGGATTTTAAACT ACAGAAAATAACTCGAGAGAAGAATGATGAAATTGCAAAAGTCAAGAAAGATATGGAAGAGCAGTGTTCCAAACTTCAAAAGATAACCCGAGAAAAAAAT GAGGAGCTGCAGAAGATAACTCGAGAGAAGAATGATGAAATTGCACGCATAAAAAAAGACTTGGAGCAGTCTTCTACAAGTTCATGGGCTATTTTGCCTT CGATTAGGTACCTTCCGAAGAGCTCAGAAGGTGAAAGGGTACATTTTACGAGAAGGCGACAGGTTCCGCCTGAAACGTTTGTCTATACCGAACAATCGTA TGATTTTATCAGCTGTAATATGCCGAGAATAGAGCCTAGTCTCAACGTTTTCAACAATGCCCAGTTCGTCGACGAGGAGAATACAGGGTGGCCTATCCCG ACTTCTACATATGTATTTATCGGCAAGAACAACAGAGGGTTCGATAAGAACAACTGGTGGTTTGCCAAGACTACCCACCCTGAAGGCGGATTGACAATGC TGGCTTATTACGATGGCAATTTCTCTCAATTCAGTTCCGGTCCTGACCGTATAATTCGATTGCCGTTTCTGAAAGATGCTACCCTTGGACCTTATAAGCC GTTCTTCCTGCTCGATGTGCATTCGTTAGGGGTGAAGTTGGCTTTCATGTATAGGGTTTAG
AA sequence Show only first row Show all	>Lus10042237 pacid=23153613 polypeptide=Lus10042237 locus=Lus10042237.g ID=Lus10042237.BGIv1.0 annot-version=v1.0 MAPFDFKSNNHFVASSDGTTLQVHELTANHMVHPLSIRKAHWKQVANINTISLEDDPDEQISYDGLLFFDGYGRIEGTKELTMLAQHLKRLRLLVNPEGY CFQESVELADYADFGIHYLRLNDLFSWPHHGVHLATTSLWSRSELKYQMPKPKPTTTADDHHGHGINYLQKKLEELKRLLKEKEDELEKADEVKDEELEK LRKEKDEEIRVVRKKKDDEKVKARKAEEALEKLKVEMEDSKESKDEEMEQLRKQLKRKDEEMRILKREKDKYKETNAKRIEELEKLKEEMEDANEELRRI LKVHEQNGKVDVKSARKIAELEKQKNEELERITREKNDEIARIKKDYLDEKSKLQNIIQENNEELKKITQEKNAEVERITREKNKEMERITREKNDEIAR IKKDYMEENSKLQKIIQKNNEDLKKITQEKNEELQTITRERNDEIAHNKKNLEEQSFKLEKIIQEKNKELQTITQEKNDEIAHIKKNLKEQGSKLEKIVQ EKNEEMQKITREKNNEIARIKKNLEEQSSKLEKIIEKKNEELQKIIQEKNDEITRIKKNLDEQDFKLQKITREKNDEIAKVKKDMEEQCSKLQKITREKN EELQKITREKNDEIARIKKDLEQSSTSSWAILPSIRYLPKSSEGERVHFTRRRQVPPETFVYTEQSYDFISCNMPRIEPSLNVFNNAQFVDEENTGWPIP TSTYVFIGKNNRGFDKNNWWFAKTTHPEGGLTMLAYYDGNFSQFSSGPDRIIRLPFLKDATLGPYKPFFLLDVHSLGVKLAFMYRV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27595			Plant protein of unknown funct...		Lus10042237 [exp]	0	1
AT3G11810			unknown protein		Lus10030427 [exp]	2.0	0.8601
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10040354 [exp]	11.0	0.7350
					Lus10033372 [exp]	15.2	0.8350
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10000022 [exp]	16.4	0.7222
AT5G52450			MATE efflux family protein (.1...		Lus10019492 [exp]	17.7	0.7556
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036822 [exp]	25.0	0.7000
					Lus10020249 [exp]	28.7	0.7971
AT3G18670			Ankyrin repeat family protein ...		Lus10000489 [exp]	37.6	0.6811
AT3G01190			Peroxidase superfamily protein...		Lus10007638 [exp]	42.0	0.7575
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10012240 [exp]	63.7	0.7016

Compare expression of checked genes

Lus10042237 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.