Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13920 396 / 5e-122 AtRLP50 receptor like protein 50 (.1) AT3G11010 394 / 5e-121 AtRLP34 receptor like protein 34 (.1) AT3G05650 377 / 3e-115 AtRLP32 receptor like protein 32 (.1) AT3G11080 377 / 2e-114 AtRLP35 receptor like protein 35 (.1) AT1G45616 377 / 7e-114 AtRLP6 receptor like protein 6 (.1) AT3G05660 360 / 1e-108 AtRLP33 receptor like protein 33 (.1) AT1G47890 360 / 1e-107 AtRLP7 receptor like protein 7 (.1) AT2G32680 357 / 1e-107 AtRLP23 receptor like protein 23 (.1) AT4G13810 349 / 4e-106 AtRLP47 receptor like protein 47 (.1.2) AT2G33020 348 / 2e-104 AtRLP24 receptor like protein 24 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026415 [exp] 1645 / 0 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10003389 [exp] 1105 / 0 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10003387 [exp] 931 / 0 AT1G47890 394 / 3e-120 receptor like protein 7 (.1) Lus10016402 [exp] 769 / 0 AT1G47890 313 / 4e-94 receptor like protein 7 (.1) Lus10019693 [exp] 729 / 0 AT2G33050 295 / 1e-91 receptor like protein 26 (.1) Lus10004310 [exp] 710 / 0 AT2G33060 358 / 6e-111 receptor like protein 27 (.1) Lus10006825 [exp] 689 / 0 AT1G47890 377 / 6e-114 receptor like protein 7 (.1) Lus10004313 [exp] 660 / 0 AT2G33060 335 / 5e-103 receptor like protein 27 (.1) Lus10002215 [exp] 510 / 4e-170 AT4G20140 202 / 7e-56 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G120600 [exp] 967 / 0 AT1G47890 441 / 7e-137 receptor like protein 7 (.1) Potri.016G120532 [exp] 673 / 0 AT1G45616 325 / 9e-98 receptor like protein 6 (.1) Potri.001G128400 [exp] 668 / 0 AT1G45616 498 / 2e-159 receptor like protein 6 (.1) Potri.001G437700 [exp] 546 / 1e-177 AT1G47890 397 / 4e-122 receptor like protein 7 (.1) Potri.016G126900 [exp] 526 / 5e-170 AT1G45616 510 / 5e-165 receptor like protein 6 (.1) Potri.016G127000 [exp] 520 / 1e-167 AT1G47890 588 / 0.0 receptor like protein 7 (.1) Potri.016G127101 [exp] 496 / 2e-158 AT1G47890 580 / 0.0 receptor like protein 7 (.1) Potri.012G027600 [exp] 496 / 4e-157 AT1G71400 395 / 1e-121 receptor like protein 12 (.1) Potri.001G389100 [exp] 472 / 2e-149 AT5G27060 468 / 1e-149 receptor like protein 53 (.1) Potri.012G010445 [exp] 456 / 6e-143 AT3G28890 360 / 4e-111 receptor like protein 43 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10042239 pacid=23153774 polypeptide=Lus10042239 locus=Lus10042239.g ID=Lus10042239.BGIv1.0 annot-version=v1.0 ATGAAACTTCACCTACTCGCACTCTCAATAGTGATCCTAGTTGGAAGCCTTGTCAGCTTGGTGTCAGGCCGATGTCAGGGTGACCAACATTCGCTTCTGC TCCAATTCAAACAAGGCCTCATTTTCGACCAATCATACTCTGCAAAATTGGCCAAGTGGAATGCCAGTACTGACTGCTGTAACTGGCCCGGCATTACTTG CGGTCATGGTGGCTTTGGTCATGTTATCGACCTCGACTTGAGCAACGAATTCATCACCGGAGGACTTGATGATTCCAAAGCTCTGTTTAGCCTTCAGTAT CTTCAGTCCCTGGATTTATCTAACAACTACTTCAATACAAATGTTCCAAATGACCTTGCCAACCTCACAAGTTTGAGATATCTGAATTTATCCAGGTCTG GCTTCTTTGGGCAAGTTCCTGCTAGCATATCTCGGATGACAAGCTTGGTTAGCCTTGATTTGTCATTCCAGGATGAATTTATGGTTCTTGATTTATCATT CCAGGATGGAACTACTTCTAATGTGTATCCAATTCCTATGAGCCTAGAACTCCAATACCCAAATCTTGGTGAACTCGTTGAAAATTTGACACGGCTGGTT GATCTCCGACTTGATCTTGTGACCATATATGATCATCACCAGGGGAACCAGTGGTGTGAGGCCTTATCTTCTTCATTGCCGAATCTCGAAGTGTTAAGCA TGTCCAATTGTCTCCTGCCAGGCCCTCTCGATCCTTCCCTCTCAAAGCTTCAACATCTATCGGTAGTTCAATTGGATTACAACGACTTCTCTTCACCAGT TCCGGAATCATTTGCATATTTCAGAAACTTGACTAGCCTGACTATGAGAGATTGCGGGTTGAAAGGAACATTTCCTGCAAAGATACTCCAAATTCCAAGC TTGGAGGTTCTCGACTTGTCTTATAATGAACGTCTTGAAGGGGTTTTTCCAGACTTCCCTCAGAATCACTGTATGAAGACCCTGATACTGAGTTACACAA ACTTCTCAGGTGTGTTGCCCCCATCAGTGGGAAACCTTGGCAAGTTATCCCATATAGAGCTTGCACAAAGTCGTTTCAGTGGAATGGTTCCAAAGACGTT CGAAAAACTCACTCAACTGGAGTATCTGGATTTCTCATACAATAATTTCACAGGTCTACTTCTATCACTGGACTTGTTCAAGAATCTCGTGCATGTAGAC TTATCTCACAACCAGCTAGCAGGTTATATACCAAGTCACTCGGAAAGTTTTGAAAAACTTGTCTATGCTGACTTGAGCAAGAATTCTTTCAACGAAACCA TCCCTCCATCTTTATTTGCTAGTCCATACTTGGAGCATATTAATCTCTCATTTAACCAACTTCGAGGTAAGGCTCCTGAGTTTCCGAACCTTGCTTCCTC TCTCGCTGTAGAATTTTTGGATTTGAGCAACAATAATCTACAAGGTCCGATCCCTCATTCATTTTTTACACTTTCAACAATTCGAGTCCTCTATCTTCAT TATAATAAGTTCAGTGGAAGTGTACAATTCAGTTGGATTCAGAGGTTGCAAAATCTCACCAACCTTGATCTTTCATACAACAACGTGACCGTGGACATAA GTGGCAACAACAAGTCTACTATATCCATCATTCCACAGTTTGAGACCTTGCGTATGGCATCCTGCAATATGAGGGCATTTCCTGAGCTGGGAAGCCAATC ATCGCTAACATATCTAGATCTTTCAGCCAACAACATCAATGGGGTAGTGCCTCGTTGGATTCTAGAATCCACAAGCCTTTTCTATCTAAATCTTTCTCAC AACTATCTAGTGGGTCTCCAGCTACAATCTGTTTCTCTTCCTAGTCTTTTTATCTTGGACATACATGACAATCAATTCCAAGGTGATATTCCGATCATAC AATCATCACCCTTTCACATTGATTATTCTTACAATCTTTTCAATGGTTCCATTCCAACTACAAATAAAGCTCGAACTTACCTAACGAACGCTAACTTCTT TTCATTATCCAACAATCGCCTCAGAGGAGCTATTCCTGCAAGTATTTGCATGGATCTCGAAGAAGTCCTTGATTTCTCAAACAATAATTTGAATGGCACC ATTCCAGGTTGTTTAGTAGGAAACAAATGGCTTGCTATCCTAAATTTGAGGGGTAATAATCTTAGTGGCGGGATACCGGATACATTCCAAACTTCTTGTT CCTTAAAGACTCTTGACCTCAGTGGGAACCAATTAGTGGGAAAGATTCCAAAGTCCTTGGAGAATTGCACGGAATTAGAAGTTTTGGACATTGGAAACAA CAGAATATCAGATGTCTTTCCTTGTCTTCAAAGAAACAGACCCAACTTGCGTGTTCTTATCTTGCGAAACAACCTCTTCCATGGGAGCATTGGGTGTCCA CATTTTCCCGGTACTTGGAAAAAGCTTCAGATTGTAGACTTCGCAATCAACAATTTTTCAGGTCCCTTGAATGCCAAATACTTGGCTACCTGGGAAAACA TGATGATAGGTGCAGAGGGACTGCACGATCACCTCAAATATGAATCCGTTAACAGCACTGATTATGAAAATTCCATAACTGTTAGCAGCAAGGGCCTCCA ACGGGAAATTGTGAAGATCCTAAAGGTATTCAAGTCCATGGACTTTTCAAGCAACAATTTCGATGGAAAAATACCAGAAGTCATGGGAAAATTCAGAGCA GTTCAGGTCCTCAATCTATCCCACAATGCTTTTACTGGTAATATCCCATCAGCTTTTGGTGATCTGTCAAACATGGAGTCTCTAGATCTCTCTCATAACA AGCTCAAAGGACATATCCCAGATGAGTTAACAGGAATGAAATTCCTCGAAGTCCTCAACCTATCGGATAACAATCTAGTCGGGAGAATCCCAACTGGCAA TCAGTTTCAAACATTTGACAACACTTCATTTGGAGCTAACCCAGATTTGTGTGGGATACCTTTAACGAAAAATTGCACTCCAAGTTCACCAGTTCATGGA GATGCCACAATTAGCCATGAGAATCATTCTTCAAGAGTTGATTGGGACCTCTTAAGCATGGCATTTGGATATGTTTTTGGCTTAGGCGCTCTTATGTTAC CAGCTGCGATATGGTCGAGTTTCCGGATTTGGTATTGGCCAAAGGTTGACTATTTGCTCGTCTGGATGTTTCCCAAGTTATATACGAAAGACTGGAATAA TCGTCTTGTACGAACGCGAAAAAAGAAGAGTATAATCAAGGATGATAAGCCGATAATTAACCATCACATGTAA
AA sequence Show only first row Show all	>Lus10042239 pacid=23153774 polypeptide=Lus10042239 locus=Lus10042239.g ID=Lus10042239.BGIv1.0 annot-version=v1.0 MKLHLLALSIVILVGSLVSLVSGRCQGDQHSLLLQFKQGLIFDQSYSAKLAKWNASTDCCNWPGITCGHGGFGHVIDLDLSNEFITGGLDDSKALFSLQY LQSLDLSNNYFNTNVPNDLANLTSLRYLNLSRSGFFGQVPASISRMTSLVSLDLSFQDEFMVLDLSFQDGTTSNVYPIPMSLELQYPNLGELVENLTRLV DLRLDLVTIYDHHQGNQWCEALSSSLPNLEVLSMSNCLLPGPLDPSLSKLQHLSVVQLDYNDFSSPVPESFAYFRNLTSLTMRDCGLKGTFPAKILQIPS LEVLDLSYNERLEGVFPDFPQNHCMKTLILSYTNFSGVLPPSVGNLGKLSHIELAQSRFSGMVPKTFEKLTQLEYLDFSYNNFTGLLLSLDLFKNLVHVD LSHNQLAGYIPSHSESFEKLVYADLSKNSFNETIPPSLFASPYLEHINLSFNQLRGKAPEFPNLASSLAVEFLDLSNNNLQGPIPHSFFTLSTIRVLYLH YNKFSGSVQFSWIQRLQNLTNLDLSYNNVTVDISGNNKSTISIIPQFETLRMASCNMRAFPELGSQSSLTYLDLSANNINGVVPRWILESTSLFYLNLSH NYLVGLQLQSVSLPSLFILDIHDNQFQGDIPIIQSSPFHIDYSYNLFNGSIPTTNKARTYLTNANFFSLSNNRLRGAIPASICMDLEEVLDFSNNNLNGT IPGCLVGNKWLAILNLRGNNLSGGIPDTFQTSCSLKTLDLSGNQLVGKIPKSLENCTELEVLDIGNNRISDVFPCLQRNRPNLRVLILRNNLFHGSIGCP HFPGTWKKLQIVDFAINNFSGPLNAKYLATWENMMIGAEGLHDHLKYESVNSTDYENSITVSSKGLQREIVKILKVFKSMDFSSNNFDGKIPEVMGKFRA VQVLNLSHNAFTGNIPSAFGDLSNMESLDLSHNKLKGHIPDELTGMKFLEVLNLSDNNLVGRIPTGNQFQTFDNTSFGANPDLCGIPLTKNCTPSSPVHG DATISHENHSSRVDWDLLSMAFGYVFGLGALMLPAAIWSSFRIWYWPKVDYLLVWMFPKLYTKDWNNRLVRTRKKKSIIKDDKPIINHHM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Lus10042239 [exp]	0	1
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Lus10026415 [exp]	2.4	0.8795
AT3G47570			Leucine-rich repeat protein ki...		Lus10032306 [exp]	6.3	0.8700
AT4G03230			S-locus lectin protein kinase ...		Lus10031591 [exp]	7.7	0.8395
AT1G34420			leucine-rich repeat transmembr...		Lus10009429 [exp]	8.4	0.8053
AT1G74090		SOT18, ATSOT18,...	ARABIDOPSIS SULFOTRANSFERASE 5...		Lus10003069 [exp]	11.5	0.8294
AT2G17040	NAC	ANAC036	NAC domain containing protein ...		Lus10022636 [exp]	16.7	0.8490
AT2G17040	NAC	ANAC036	NAC domain containing protein ...		Lus10025118 [exp]	17.3	0.8283
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10034279 [exp]	19.8	0.8255
AT1G64380	AP2_ERF		Integrase-type DNA-binding sup...		Lus10001898 [exp]	20.5	0.8249
AT3G47570			Leucine-rich repeat protein ki...		Lus10011387 [exp]	21.8	0.8235

Compare expression of checked genes

Lus10042239 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.