Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30260 302 / 1e-104 U2B'' U2 small nuclear ribonucleoprotein B (.1) AT1G06960 293 / 3e-101 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT2G47580 209 / 1e-67 U1A spliceosomal protein U1A (.1) AT4G12640 50 / 8e-07 RNA recognition motif (RRM)-containing protein (.1) AT5G12190 47 / 1e-06 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G21320 44 / 4e-05 nucleotide binding;nucleic acid binding (.1.2) AT3G21215 42 / 0.0001 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G09230 42 / 0.0002 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G13700 41 / 0.0005 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026413 [exp] 403 / 2e-144 AT2G30260 350 / 1e-123 U2 small nuclear ribonucleoprotein B (.1) Lus10008424 [exp] 222 / 6e-73 AT2G47580 365 / 4e-129 spliceosomal protein U1A (.1) Lus10003358 [exp] 221 / 1e-72 AT2G47580 367 / 7e-130 spliceosomal protein U1A (.1) Lus10018903 [exp] 50 / 9e-07 AT1G21320 182 / 5e-54 nucleotide binding;nucleic acid binding (.1.2) Lus10028599 [exp] 47 / 4e-06 AT1G21320 206 / 4e-66 nucleotide binding;nucleic acid binding (.1.2) Lus10026814 [exp] 44 / 1e-05 AT5G12190 225 / 8e-78 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10028598 [exp] 45 / 3e-05 AT1G76940 135 / 9e-38 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10016070 [exp] 41 / 0.0005 AT4G12640 554 / 0.0 RNA recognition motif (RRM)-containing protein (.1) Lus10025188 [exp] 41 / 0.0007 AT4G12640 567 / 0.0 RNA recognition motif (RRM)-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G121400 [exp] 349 / 3e-123 AT2G30260 305 / 7e-106 U2 small nuclear ribonucleoprotein B (.1) Potri.013G153700 [exp] 343 / 8e-121 AT2G30260 297 / 8e-103 U2 small nuclear ribonucleoprotein B (.1) Potri.014G127800 [exp] 230 / 6e-76 AT2G47580 347 / 6e-122 spliceosomal protein U1A (.1) Potri.002G203600 [exp] 225 / 8e-74 AT2G47580 349 / 1e-122 spliceosomal protein U1A (.1) Potri.006G224900 [exp] 52 / 6e-08 AT1G21320 122 / 2e-33 nucleotide binding;nucleic acid binding (.1.2) Potri.012G019300 [exp] 49 / 5e-07 AT1G76940 167 / 2e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.015G009000 [exp] 49 / 1e-06 AT1G76940 170 / 8e-53 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G273200 [exp] 45 / 5e-06 AT5G12190 227 / 1e-78 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G070200 [exp] 45 / 2e-05 AT1G76940 215 / 4e-70 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.013G054300 [exp] 45 / 2e-05 AT1G09230 253 / 3e-79 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10042240 pacid=23154021 polypeptide=Lus10042240 locus=Lus10042240.g ID=Lus10042240.BGIv1.0 annot-version=v1.0 ATGCTAACGGCTGATATTCCGCCCAATCAAACTATCTACATTAAAAACCTCAACGAGAAGGTCAAGAAAGAAGAATTGAGAAGATCGCTTTACTGTTTGT TTTCTCAATATGGAAGGATTCTGGATGTTGTTGCCTTGAAGACGGCCAAACTCAGAGGTCAGGCATGGGTTTGCTTCAGTGAAGTGACAGCTGCAAGTAA CGCAGTTCGGCAAATGCAAGGTTTTCCTTTCTATGAAAAACCCATGCGCATCCAATATGCAAAAACAAAGTCAGACTGCCTCGTAGAGGCAGAAGGAGTC TATGATCCAAATGCAAAGAAGAAGAAAAAGCAGGAAGAGAAAGCTGAAAAGAAAAGACGTGCTGAAGAAGCTCATCAATCTGCCCCAGCTAATGGCGCAT CTGCTGACAATAACAGAGCTCATTCGCAGGCTCCTTTCCGCCAAGGAAGCAGTGGCGGTGATCAAGAAGCAATTCCTCCGAACAACATTCTGTTCATCCA GAATCTGCCGCACGGAACCACGAGCATGATGCTGCACGTGCTCTTCCAACAGTACCCTGGGTTCAAGGAAGTCCGGATGGTGGAAGCCAAGCCGGGGATC GCATTCGTGGAGTTTGAAGACGATGTGCAGTCATCCATGGCGATGCAGGCACTTCAAGGCTTCAAGATTACTCCTCAAAACCCCATGGCTATCAGTTTTG CCAAGAAGTAG
AA sequence Show only first row Show all	>Lus10042240 pacid=23154021 polypeptide=Lus10042240 locus=Lus10042240.g ID=Lus10042240.BGIv1.0 annot-version=v1.0 MLTADIPPNQTIYIKNLNEKVKKEELRRSLYCLFSQYGRILDVVALKTAKLRGQAWVCFSEVTAASNAVRQMQGFPFYEKPMRIQYAKTKSDCLVEAEGV YDPNAKKKKKQEEKAEKKRRAEEAHQSAPANGASADNNRAHSQAPFRQGSSGGDQEAIPPNNILFIQNLPHGTTSMMLHVLFQQYPGFKEVRMVEAKPGI AFVEFEDDVQSSMAMQALQGFKITPQNPMAISFAKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30260		U2B''	U2 small nuclear ribonucleopro...		Lus10042240 [exp]	0	1
AT1G65650		UCH2	Peptidase C12, ubiquitin carbo...		Lus10031062 [exp]	3.3	0.9076
AT4G15950		RDM2, NRPE4, NR...	RNA-DIRECTED DNA METHYLATION 2...		Lus10039097 [exp]	4.0	0.9082
AT1G41880			Ribosomal protein L35Ae family...		Lus10028254 [exp]	4.1	0.9352
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10023457 [exp]	6.2	0.9311
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Lus10023091 [exp]	8.7	0.8933
AT4G39200			Ribosomal protein S25 family p...		Lus10021706 [exp]	9.2	0.9282
AT2G20450			Ribosomal protein L14 (.1)		Lus10021170 [exp]	9.5	0.9304
AT2G02470	Alfin	AL6	alfin-like 6 (.1.2)		Lus10026269 [exp]	9.7	0.8815
AT4G37210			Tetratricopeptide repeat (TPR)...		Lus10019658 [exp]	13.4	0.8967
AT5G14640		ATSK13	shaggy-like kinase 13 (.1)		Lus10013088 [exp]	13.6	0.8836

Compare expression of checked genes

Lus10042240 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.