Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22590 168 / 6e-51 UDP-Glycosyltransferase superfamily protein (.1) AT5G65550 148 / 2e-43 UDP-Glycosyltransferase superfamily protein (.1) AT5G49690 142 / 4e-41 UDP-Glycosyltransferase superfamily protein (.1) AT5G54060 90 / 1e-21 UF3GT UDP-glucose:flavonoid 3-o-glucosyltransferase (.1) AT1G64920 84 / 6e-20 UDP-Glycosyltransferase superfamily protein (.1) AT5G54010 84 / 8e-20 UDP-Glycosyltransferase superfamily protein (.1) AT3G29630 78 / 1e-17 UDP-Glycosyltransferase superfamily protein (.1) AT4G09500 77 / 3e-17 UDP-Glycosyltransferase superfamily protein (.1.2) AT4G27570 76 / 7e-17 UDP-Glycosyltransferase superfamily protein (.1) AT1G50580 76 / 7e-17 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026412 [exp] 211 / 2e-71 AT2G22590 173 / 1e-52 UDP-Glycosyltransferase superfamily protein (.1) Lus10025711 [exp] 155 / 4e-46 AT2G22590 473 / 2e-164 UDP-Glycosyltransferase superfamily protein (.1) Lus10035951 [exp] 147 / 4e-43 AT2G22590 464 / 3e-161 UDP-Glycosyltransferase superfamily protein (.1) Lus10012726 [exp] 142 / 3e-41 AT2G22590 471 / 3e-164 UDP-Glycosyltransferase superfamily protein (.1) Lus10026410 [exp] 119 / 3e-35 AT5G65550 82 / 1e-18 UDP-Glycosyltransferase superfamily protein (.1) Lus10027850 [exp] 122 / 8e-34 AT5G49690 560 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10003154 [exp] 91 / 4e-22 AT5G54010 318 / 3e-104 UDP-Glycosyltransferase superfamily protein (.1) Lus10013337 [exp] 91 / 6e-22 AT5G54010 452 / 1e-156 UDP-Glycosyltransferase superfamily protein (.1) Lus10008453 [exp] 87 / 1e-20 AT5G54010 539 / 0.0 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G182575 [exp] 153 / 3e-45 AT5G49690 468 / 7e-163 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G030600 [exp] 152 / 8e-45 AT2G22590 537 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.012G034100 [exp] 144 / 7e-42 AT2G22590 505 / 2e-177 UDP-Glycosyltransferase superfamily protein (.1) Potri.003G184400 [exp] 137 / 4e-39 AT5G49690 549 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.014G088400 [exp] 130 / 2e-36 AT2G22590 374 / 4e-125 UDP-Glycosyltransferase superfamily protein (.1) Potri.002G162300 [exp] 126 / 4e-35 AT2G22590 372 / 6e-125 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G042800 [exp] 122 / 7e-34 AT5G49690 377 / 3e-127 UDP-Glycosyltransferase superfamily protein (.1) Potri.006G179700 [exp] 88 / 4e-21 AT5G54010 349 / 2e-116 UDP-Glycosyltransferase superfamily protein (.1) Potri.011G097900 [exp] 85 / 6e-20 AT5G54010 498 / 1e-174 UDP-Glycosyltransferase superfamily protein (.1) Potri.011G061000 [exp] 79 / 5e-18 AT5G54010 468 / 6e-163 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042241 pacid=23153970 polypeptide=Lus10042241 locus=Lus10042241.g ID=Lus10042241.BGIv1.0 annot-version=v1.0 ATGGCGGACGACGAAATCCACAAGAAGCTCCACATCGCAGTCTTCCCATGGCTAGCATTCGGTCACATGATTCCATTCCTAGAGCTCTCCAAGCTCTTAG CCCAAGAAGGCCACTCGATTTCCTACATCTCAACACCACGTAACATCAACCGTCTCCCCCAATTCCCTGCTCATCTCACTCACCTCTTTAACTTCGTCCG GATTCCTCTCCCCGCCGGCGATGGGAACCTCCCCGACGGAGCTGAATCGACCTCCGATCTCCCCCAGCACCTTGTCCCTTACCTCAAGCTCGCATACGAC GCTCTCGAACCGGAGCTGACCCAATTCCTCGAGACCGAACGACCTGACTGGGTAATTTACGATTTCGCCCCTCACTGGCTCCCGCCCACAGCAGACCAGA TCCGCGGTATCCGATAG
AA sequence Show only first row Show all	>Lus10042241 pacid=23153970 polypeptide=Lus10042241 locus=Lus10042241.g ID=Lus10042241.BGIv1.0 annot-version=v1.0 MADDEIHKKLHIAVFPWLAFGHMIPFLELSKLLAQEGHSISYISTPRNINRLPQFPAHLTHLFNFVRIPLPAGDGNLPDGAESTSDLPQHLVPYLKLAYD ALEPELTQFLETERPDWVIYDFAPHWLPPTADQIRGIR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65550			UDP-Glycosyltransferase superf...		Lus10042241 [exp]	0	1
AT5G65550			UDP-Glycosyltransferase superf...		Lus10042242 [exp]	1.0	0.9051
AT2G31040			ATP synthase protein I -relate...		Lus10029836 [exp]	6.8	0.8463
AT4G28030			Acyl-CoA N-acyltransferases (N...		Lus10019975 [exp]	12.1	0.8146
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10037559 [exp]	14.0	0.7870
AT2G31040			ATP synthase protein I -relate...		Lus10020702 [exp]	14.1	0.8258
AT3G17950			unknown protein		Lus10006150 [exp]	16.2	0.7974
AT2G28260		ATCNGC15	cyclic nucleotide-gated channe...		Lus10041319 [exp]	16.6	0.8164
AT2G35200			unknown protein		Lus10036051 [exp]	17.0	0.7835
AT3G06240			F-box family protein (.1)		Lus10013872 [exp]	18.7	0.8032
AT1G49230			RING/U-box superfamily protein...		Lus10006786 [exp]	22.5	0.7381

Compare expression of checked genes

Lus10042241 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.