Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65550 240 / 6e-76 UDP-Glycosyltransferase superfamily protein (.1) AT5G49690 220 / 3e-68 UDP-Glycosyltransferase superfamily protein (.1) AT2G22590 199 / 3e-60 UDP-Glycosyltransferase superfamily protein (.1) AT5G26310 119 / 4e-30 UGT72E3 UDP-Glycosyltransferase superfamily protein (.1) AT1G05675 117 / 1e-29 UDP-Glycosyltransferase superfamily protein (.1) AT1G05680 117 / 1e-29 UGT74E2 Uridine diphosphate glycosyltransferase 74E2 (.1) AT5G53990 115 / 4e-29 UDP-Glycosyltransferase superfamily protein (.1) AT1G64910 112 / 6e-28 UDP-Glycosyltransferase superfamily protein (.1) AT5G66690 112 / 7e-28 UGT72E2 UDP-Glycosyltransferase superfamily protein (.1) AT2G18560 110 / 1e-27 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027850 [exp] 215 / 3e-66 AT5G49690 560 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10012726 [exp] 199 / 5e-60 AT2G22590 471 / 3e-164 UDP-Glycosyltransferase superfamily protein (.1) Lus10035951 [exp] 185 / 1e-54 AT2G22590 464 / 3e-161 UDP-Glycosyltransferase superfamily protein (.1) Lus10025711 [exp] 184 / 2e-54 AT2G22590 473 / 2e-164 UDP-Glycosyltransferase superfamily protein (.1) Lus10026411 [exp] 133 / 7e-39 AT5G65550 94 / 8e-24 UDP-Glycosyltransferase superfamily protein (.1) Lus10043445 [exp] 139 / 2e-37 AT5G65550 225 / 3e-68 UDP-Glycosyltransferase superfamily protein (.1) Lus10026410 [exp] 131 / 2e-37 AT5G65550 82 / 1e-18 UDP-Glycosyltransferase superfamily protein (.1) Lus10028864 [exp] 127 / 8e-34 AT5G65550 154 / 1e-42 UDP-Glycosyltransferase superfamily protein (.1) Lus10008956 [exp] 122 / 2e-31 AT5G65550 189 / 1e-54 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G182575 [exp] 279 / 6e-91 AT5G49690 468 / 7e-163 UDP-Glycosyltransferase superfamily protein (.1) Potri.010G182650 [exp] 232 / 1e-75 AT5G65550 254 / 4e-82 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G030600 [exp] 226 / 1e-70 AT2G22590 537 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.003G184400 [exp] 215 / 2e-66 AT5G49690 549 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.002G162300 [exp] 212 / 4e-65 AT2G22590 372 / 6e-125 UDP-Glycosyltransferase superfamily protein (.1) Potri.014G088400 [exp] 207 / 4e-63 AT2G22590 374 / 4e-125 UDP-Glycosyltransferase superfamily protein (.1) Potri.012G034100 [exp] 203 / 1e-61 AT2G22590 505 / 2e-177 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G042800 [exp] 196 / 3e-59 AT5G49690 377 / 3e-127 UDP-Glycosyltransferase superfamily protein (.1) Potri.011G097900 [exp] 129 / 5e-34 AT5G54010 498 / 1e-174 UDP-Glycosyltransferase superfamily protein (.1) Potri.008G024900 [exp] 126 / 6e-33 AT5G65550 173 / 7e-49 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10042242 pacid=23153582 polypeptide=Lus10042242 locus=Lus10042242.g ID=Lus10042242.BGIv1.0 annot-version=v1.0 ATGAATCCGGTGGATTTCACCGTACCTCCGAAATGGATCCCGTTCCCTTCCAACCTAGCGTATCGTCTCCACGAAGCTAAGCGGCTTCTCGAGCCAATGA AATCGGCTCCTCCACAGCACGTCTCCGATTTTGAACGAACAAGCTCCACCACAGCTGGATGCGACGCCGTAGCGATCCGATCCTGTCCGGATCTCGAATC TGATTGGCTCGACCTCGCGAGACAGCTCTACGGGAAGCCGTTTATTCCAATCGGCCTCCTCCCTCCACCTCCAGATCCACGTTTCGTCGCCGACGAAACC TGGCTCGAAATCTCGGAGTGGCTGAACAAGCAGGAGAAGGCAACGGTCGTGTATGTTGCGTTCGGTACCGAAGTAGCCCTAACAAAAGACGAAATTACAG AGCTAGCTCTAGGTCTCGAATCCTCCGAGATCCCGTTTGTATGGGTACTGAAGCAGCATTTCCACGACCTGCTGCCAAACGGATTCATTTCGCCAATCGG ATTATCCAAATCTGGAATCATCTGCTCGGCCTGGGTGCCGCAGGTGAAGATCCTAGGACACGAATCAGTAGGCGGATTCCTGACACACTGCGGGTGGAGT TCAGTGATCGAATCACTTCATTTCGGTGTTCCTTTAATCATGCTGCCGCTACATTTGTCGGATCAAGGGCTGATCGCGAGGGCGTTTGCGGAGAAGGAGG TGGGTATCGAGATTCCGAGGGACGAAGAGGACGGGGCTTTCTCGAGAGGAGATGTGGCAGCGACGGTGAGGACGGTGGTGGCGGAGGCGGAAGGGCAGAG GTACAGAGACAGAGCGGCGGAGGAGAAGGAGAAGGTGTTTGGGAATCGGGAGATTCATGATCGTTGCTTTGCTGAGTTTGTGAGATTTCTTGAAGATCAT CGTAGGAACAAGGCGTTGGGCGAGACACCGGTAAACTAG
AA sequence Show only first row Show all	>Lus10042242 pacid=23153582 polypeptide=Lus10042242 locus=Lus10042242.g ID=Lus10042242.BGIv1.0 annot-version=v1.0 MNPVDFTVPPKWIPFPSNLAYRLHEAKRLLEPMKSAPPQHVSDFERTSSTTAGCDAVAIRSCPDLESDWLDLARQLYGKPFIPIGLLPPPPDPRFVADET WLEISEWLNKQEKATVVYVAFGTEVALTKDEITELALGLESSEIPFVWVLKQHFHDLLPNGFISPIGLSKSGIICSAWVPQVKILGHESVGGFLTHCGWS SVIESLHFGVPLIMLPLHLSDQGLIARAFAEKEVGIEIPRDEEDGAFSRGDVAATVRTVVAEAEGQRYRDRAAEEKEKVFGNREIHDRCFAEFVRFLEDH RRNKALGETPVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65550			UDP-Glycosyltransferase superf...		Lus10042242 [exp]	0	1
AT5G65550			UDP-Glycosyltransferase superf...		Lus10042241 [exp]	1.0	0.9051
AT3G23880			F-box and associated interacti...		Lus10008870 [exp]	2.8	0.9044
AT4G16950		RPP5	RECOGNITION OF PERONOSPORA PAR...		Lus10020525 [exp]	5.9	0.8948
AT3G19320			Leucine-rich repeat (LRR) fami...		Lus10002828 [exp]	6.3	0.9003
AT4G26530			Aldolase superfamily protein (...		Lus10032956 [exp]	7.1	0.9004
AT3G17950			unknown protein		Lus10006150 [exp]	12.6	0.8478
AT2G47400		CP12-1	CP12 domain-containing protein...		Lus10010006 [exp]	13.0	0.8796
AT3G02690			nodulin MtN21 /EamA-like trans...		Lus10031371 [exp]	14.1	0.8877
AT2G01660		PDLP6	plasmodesmata-located protein ...		Lus10016710 [exp]	14.5	0.8939
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Lus10029405 [exp]	15.0	0.8914

Compare expression of checked genes

Lus10042242 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.