Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38470 301 / 2e-96 WRKY ATWRKY33, WRKY33 WRKY DNA-binding protein 33 (.1) AT5G07100 281 / 2e-91 WRKY WRKY26 WRKY DNA-binding protein 26 (.1.2) AT2G03340 253 / 5e-78 WRKY WRKY3 WRKY DNA-binding protein 3 (.1) AT1G13960 238 / 1e-72 WRKY WRKY4 WRKY DNA-binding protein 4 (.1.2) AT4G26640 237 / 3e-72 WRKY ATWRKY20, WRKY20 WRKY family transcription factor family protein (.1.2) AT2G30250 226 / 3e-69 WRKY ATWRKY25, WRKY25 WRKY DNA-binding protein 25 (.1) AT4G26440 228 / 4e-68 WRKY ATWRKY34, MSP3, WRKY34 MICROSPORE-SPECIFIC PROMOTER 3, WRKY DNA-binding protein 34 (.1) AT4G30935 162 / 2e-44 WRKY ATWRKY32, WRKY32 WRKY DNA-binding protein 32 (.1) AT5G56270 160 / 2e-42 WRKY ATWRKY2, WRKY2, WRKY23 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) AT4G12020 150 / 2e-38 WRKY MEKK4, MAPKKK11, ATWRKY19, WRKY19 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001265 [exp] 347 / 3e-114 AT2G38470 394 / 2e-132 WRKY DNA-binding protein 33 (.1) Lus10012215 [exp] 346 / 2e-113 AT2G38470 393 / 2e-131 WRKY DNA-binding protein 33 (.1) Lus10026409 [exp] 263 / 8e-86 AT2G38470 194 / 3e-59 WRKY DNA-binding protein 33 (.1) Lus10016595 [exp] 257 / 4e-79 AT4G26640 556 / 0.0 WRKY family transcription factor family protein (.1.2) Lus10030424 [exp] 247 / 3e-76 AT1G13960 421 / 7e-144 WRKY DNA-binding protein 4 (.1.2) Lus10026634 [exp] 246 / 3e-76 AT1G13960 409 / 1e-139 WRKY DNA-binding protein 4 (.1.2) Lus10032887 [exp] 247 / 6e-74 AT5G56270 540 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10043167 [exp] 242 / 7e-74 AT4G26640 473 / 9e-163 WRKY family transcription factor family protein (.1.2) Lus10037131 [exp] 234 / 7e-72 AT2G03340 414 / 1e-141 WRKY DNA-binding protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G123500 [exp] 440 / 1e-149 AT2G38470 299 / 3e-94 WRKY DNA-binding protein 33 (.1) Potri.013G153400 [exp] 424 / 1e-143 AT2G38470 329 / 5e-106 WRKY DNA-binding protein 33 (.1) Potri.016G128300 [exp] 330 / 6e-107 AT2G38470 377 / 8e-125 WRKY DNA-binding protein 33 (.1) Potri.006G105300 [exp] 308 / 4e-99 AT2G38470 341 / 4e-111 WRKY DNA-binding protein 33 (.1) Potri.001G361600 [exp] 259 / 6e-80 AT4G26640 540 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.010G163000 [exp] 255 / 3e-79 AT1G13960 431 / 5e-147 WRKY DNA-binding protein 4 (.1.2) Potri.011G087900 [exp] 249 / 4e-76 AT4G26640 555 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.004G120800 [exp] 244 / 1e-74 AT2G03340 358 / 5e-118 WRKY DNA-binding protein 3 (.1) Potri.008G091900 [exp] 239 / 3e-73 AT2G03340 407 / 7e-138 WRKY DNA-binding protein 3 (.1) Potri.002G221600 [exp] 196 / 6e-58 AT2G04880 255 / 3e-81 zinc-dependent activator protein-1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10042243 pacid=23153955 polypeptide=Lus10042243 locus=Lus10042243.g ID=Lus10042243.BGIv1.0 annot-version=v1.0 ATGGCATCTTCCTCAGACACCTCCCACCACCACCACACCTTCACTTTCTCTTCTCACCCTTTCATGACCAACTCCGCCACTACTTTCTCCGACCTCCTCT CCGACCATCCCCCGCCACCGCCGCCTGATTCTCACCGCCACCGAGGCGGCGGCTTATCCGATCGAATCGCTGAGAGGACAGGCTCCGGCGTCCCCAAGTT CAAGTCCATCCCTCCTCCTTCCCTCCCCATTTCTCCTCCTTTCTCCCCTTCTTCCTTCTTCGCCATCCCTCCCGGCTTGAGTCCCGCCGAGCTCCTCGAC TCCCCTGTCTTGCTCTCCTCCTCCCACATTCTGCCGTCTCCGACTACCGGAACATTTCCTGCTCAGGCGTTCTGGACCAACCCCAATTCAATCCAATCTC ATCGGAGAAACGTTAAGCAAGAAGCAGCTGAAGATAAAATCTCCTCCGATTTCTCCTTCCACCAGACGGTACAAAGCCACCAACAGGAGGACTGGAGCTA TCAGGAAGCAAAGAGGAAGGAGGATGAGTCGTCATTTCAAAGCTTCTCACCGGAAATTGCCACGATTCAGGCGGCTCCTGCGGCGCCGCCGCCGAGGCAG TACCAGTCGGTGAGGGAGCAGAGGAGGGCGGAGGACGGATACAACTGGAGGAAGTACGGGCAGAAGCAGGTGAAAGGGAGCGAGAATCCGAGGAGCTACT ACAAGTGCACTTTCCCTAATTGTCCGACGAAGAAGAAGGTGGAGAAGAGGTCTTCAGATGGGCAGATTACTGAGATTGTTTACAAGGGCAGCCATAACCA TCCCAAGCCTCAGTCTAAGCAGAGATCGTCTTCCGCCGCTTCCTCCGTCACTACTGCTTCGAATTCTCAGGCGATTCATCACCCTGCTCAGAGTTATGAT CAGATTCAAGAACACTCGTTTGGGACTACTACTCATGGTAGCGGCCAAATGGACACTCCGGAGAACTCTTCCATCTCAATCGGAGGAGGAGACGATGATT TTGACTCGCATAGATCAGGGAGGGATGAGATTGATGAGGATGAACCTGATGCCAAACGATGGAGAAGAGACGTAGAGAACGACGGAATATCGTCATCATC AATGGCGGCAACTGGAAACAAAGCGGTGAGAGAGCCAAGAGTCGTAGTACAAACAAGGAGCGACATAGACATTCTCGACGACGGGTACAAATGGAGGAAG TATGGCCAAAAGGTGGTGAAGGGAAACCCTAATCCAAGAAGCTACTACAAATGCACGTACATCGGTTGTCCGGTGAGGAAGCACGTAGAAAGGGCTTCCA CGGATATGAAATCGGTAATCACCACCTACGAAGGTAAGCACAATCACAACGTCCCCGCAGCTCGCGGCAGCAGCCACCCTTCAACCAACAGAATGGGTCA GAGTGGTGCAGCCGGAGAGCAATACTACTGCACCATCGGAGAGAAGGCTGCCGATGGTGCAACAACATGA
AA sequence Show only first row Show all	>Lus10042243 pacid=23153955 polypeptide=Lus10042243 locus=Lus10042243.g ID=Lus10042243.BGIv1.0 annot-version=v1.0 MASSSDTSHHHHTFTFSSHPFMTNSATTFSDLLSDHPPPPPPDSHRHRGGGLSDRIAERTGSGVPKFKSIPPPSLPISPPFSPSSFFAIPPGLSPAELLD SPVLLSSSHILPSPTTGTFPAQAFWTNPNSIQSHRRNVKQEAAEDKISSDFSFHQTVQSHQQEDWSYQEAKRKEDESSFQSFSPEIATIQAAPAAPPPRQ YQSVREQRRAEDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVEKRSSDGQITEIVYKGSHNHPKPQSKQRSSSAASSVTTASNSQAIHHPAQSYD QIQEHSFGTTTHGSGQMDTPENSSISIGGGDDDFDSHRSGRDEIDEDEPDAKRWRRDVENDGISSSSMAATGNKAVREPRVVVQTRSDIDILDDGYKWRK YGQKVVKGNPNPRSYYKCTYIGCPVRKHVERASTDMKSVITTYEGKHNHNVPAARGSSHPSTNRMGQSGAAGEQYYCTIGEKAADGATT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07100	WRKY	WRKY26	WRKY DNA-binding protein 26 (....		Lus10042243 [exp]	0	1
AT4G36500			unknown protein		Lus10014291 [exp]	1.4	0.9292
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Lus10034897 [exp]	2.0	0.9116
AT5G47530			Auxin-responsive family protei...		Lus10006398 [exp]	2.0	0.9171
AT4G39830			Cupredoxin superfamily protein...		Lus10022504 [exp]	3.0	0.8970
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Lus10021263 [exp]	3.2	0.9076
AT4G35600		Kin4, CX32, CST...	kinase 4, CONNEXIN 32, CAST AW...		Lus10024512 [exp]	4.5	0.8720
AT4G24160			alpha/beta-Hydrolases superfam...		Lus10024310 [exp]	4.5	0.8966
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Lus10002309 [exp]	4.6	0.9147
AT4G28400			Protein phosphatase 2C family ...		Lus10039853 [exp]	5.5	0.8838
AT1G76650		CML38	calmodulin-like 38 (.1.2.3)		Lus10022343 [exp]	6.9	0.9061

Compare expression of checked genes

Lus10042243 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.