Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06990 182 / 2e-53 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G31540 174 / 1e-50 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G30310 174 / 1e-50 GDSL-like Lipase/Acylhydrolase family protein (.1) AT2G30220 172 / 1e-49 GDSL-like Lipase/Acylhydrolase family protein (.1) AT2G24560 171 / 1e-49 GDSL-like Lipase/Acylhydrolase family protein (.1) AT1G58430 166 / 1e-47 RXF26 GDSL-like Lipase/Acylhydrolase family protein (.1) AT5G45960 152 / 4e-42 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G31550 133 / 1e-36 SGNH hydrolase-type esterase superfamily protein (.1) AT2G40250 131 / 2e-34 SGNH hydrolase-type esterase superfamily protein (.1) AT2G04570 130 / 2e-34 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026406 [exp] 341 / 1e-114 AT1G06990 350 / 4e-119 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10026405 [exp] 162 / 6e-46 AT2G24560 287 / 7e-95 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10029958 [exp] 140 / 1e-37 AT2G42990 448 / 1e-158 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10041878 [exp] 141 / 3e-37 AT1G75900 279 / 7e-90 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003717 [exp] 134 / 2e-35 AT1G75900 458 / 3e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034540 [exp] 132 / 1e-34 AT1G75900 456 / 2e-161 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10013572 [exp] 132 / 1e-34 AT1G75900 435 / 2e-153 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10013957 [exp] 120 / 3e-31 AT5G45960 331 / 4e-113 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10020010 [exp] 125 / 6e-31 AT2G19080 308 / 1e-99 metaxin-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G153000 [exp] 192 / 1e-57 AT2G30220 355 / 1e-121 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.008G076600 [exp] 171 / 1e-49 AT1G06990 353 / 4e-121 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G076700 [exp] 145 / 1e-39 AT1G06990 321 / 2e-108 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G062000 [exp] 142 / 2e-38 AT5G45960 440 / 8e-155 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G242800 [exp] 138 / 6e-37 AT1G75900 419 / 6e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G205100 [exp] 138 / 1e-36 AT2G42990 492 / 2e-175 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G061900 [exp] 135 / 6e-36 AT5G45960 405 / 4e-141 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G018800 [exp] 131 / 3e-34 AT1G75900 415 / 2e-144 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160200 [exp] 129 / 1e-33 AT2G42990 437 / 3e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G219700 [exp] 126 / 2e-32 AT2G42990 439 / 1e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10042245 pacid=23153571 polypeptide=Lus10042245 locus=Lus10042245.g ID=Lus10042245.BGIv1.0 annot-version=v1.0 ATGCTGGGGATCAAGGACTCGGTCCCACCGTTCCTGGACCCGACCCTGGAGGTGCGAGACCTCATGAGTGGGGTTAGCTTCGCGTCTGCTGGGTCGGGCT ACGACGAGCTGACCACTGCGTTTACGAACGTGGTCCCGGTTCTGAAGCAGGTTGACATGTTCAGGAGGTATATTGAGAGGGTTAAGGTCGTGGTCGGGGA GGAGACAAAGGCGTTGGAGGTTGTGAATGCGGCGCTTGTGTTGGTTACGGCGGGGACTAATGACATGACTTTTAACTTCTATGATATTCCGTCGAGGAGG AGGGACTTTAATCTTACTGGCTACCACCATTTCTTGCTCAACAATCTCCAGATCTTCCTCAAGGAACTGTACAGCTTAGGAGCTCGAAGAATGATCGTGA CGGGGCTTCCACCAATCGGATGCCTACCCATCCAAATGGCTTCAAGGAATTCTCAACGATCATCATCATCATCTTCATGCATCAAAAGCCAAAACTCAGA CTCACTCTCCTACAACGACAACCTTAAGAAGCTTTTGCCCAATCTACAAGCTCAGCTTCCTCAAAGCAAGCTCATCTATGCCGACATTTACCGCCCATTT TTCAACATGATAAAATCCCCACAAAAATACGAAGGATCGTTGGTTCTAATAAGCGCGGGAACTAATGATCTCGGGAATAATTACTATGGCCATTCATTAA TCAGAAGATTGCAGTTCGATTTAGATGATTATCAGGACTTTTTGATCGCTCGAGTCCAAATCTTCGTCAAGCAAATATATGATATTGGAGGGCGTACGAT AGCAGTGGCGGGGGTGCCGCCGGTGGGGTGTCTTCCGATTCAGATGGTGTCAGCAAACCCGTTGTGGCGGACGTGCGTGGAAGATCAGAATTTGGGGTCA CAGTCTTACAATGCAAAGCTAAAGAAGATGTTATCCAAGTTTCACTCTTCACTTCCAGTAGCTAATTCCGGGGTCATGGTTGCCTACTCAGATGTCTATA ACCCAGTTATGGACATGATCACTCATCCCATGAATTACGATTTTGTGGAAGCAAGGAAAGGATGGTGTGGGAGTGGTGTGATGGAGTTGGGAATGACGTG CAACTCAGCAGCCACATCAATGACTCGTGGCAAGAACAAGCTTGACGATTATGTTTTCTTTGACACCGTTCACCCTACTTCCAAAGCTTACCAATACCTT ACCTTCAATCTTACTCACCAGCTCGCATCACTTTATAAATGA
AA sequence Show only first row Show all	>Lus10042245 pacid=23153571 polypeptide=Lus10042245 locus=Lus10042245.g ID=Lus10042245.BGIv1.0 annot-version=v1.0 MLGIKDSVPPFLDPTLEVRDLMSGVSFASAGSGYDELTTAFTNVVPVLKQVDMFRRYIERVKVVVGEETKALEVVNAALVLVTAGTNDMTFNFYDIPSRR RDFNLTGYHHFLLNNLQIFLKELYSLGARRMIVTGLPPIGCLPIQMASRNSQRSSSSSSCIKSQNSDSLSYNDNLKKLLPNLQAQLPQSKLIYADIYRPF FNMIKSPQKYEGSLVLISAGTNDLGNNYYGHSLIRRLQFDLDDYQDFLIARVQIFVKQIYDIGGRTIAVAGVPPVGCLPIQMVSANPLWRTCVEDQNLGS QSYNAKLKKMLSKFHSSLPVANSGVMVAYSDVYNPVMDMITHPMNYDFVEARKGWCGSGVMELGMTCNSAATSMTRGKNKLDDYVFFDTVHPTSKAYQYL TFNLTHQLASLYK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06990			GDSL-like Lipase/Acylhydrolase...		Lus10042245 [exp]	0	1
AT3G54220	GRAS	SGR1, SCR	SHOOT GRAVITROPISM 1, SCARECRO...		Lus10003540 [exp]	7.4	0.7749
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10004347 [exp]	13.6	0.7650
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Lus10001460 [exp]	15.2	0.7453
					Lus10015249 [exp]	27.2	0.7147
AT4G30420			nodulin MtN21 /EamA-like trans...		Lus10023211 [exp]	29.7	0.7785
AT4G12490			Bifunctional inhibitor/lipid-t...		Lus10032257 [exp]	40.2	0.7167
AT2G03630			unknown protein		Lus10026665 [exp]	42.5	0.6844
AT5G66630		DAR5	DA1-related protein 5 (.1)		Lus10009329 [exp]	49.9	0.6777
AT5G45820		PKS18, CIPK20, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10007283 [exp]	64.0	0.6975
					Lus10037199 [exp]	72.5	0.6692

Compare expression of checked genes

Lus10042245 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.