Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56110 207 / 2e-67 PRA1.B1 prenylated RAB acceptor 1.B1 (.1.2) AT2G38360 206 / 8e-67 PRA1.B4 prenylated RAB acceptor 1.B4 (.1) AT5G01640 192 / 3e-61 PRA1.B5 prenylated RAB acceptor 1.B5 (.1) AT2G40380 190 / 2e-60 PRA1.B2 prenylated RAB acceptor 1.B2 (.1) AT5G07110 186 / 7e-59 PRA1.B6 prenylated RAB acceptor 1.B6 (.1) AT5G05380 186 / 8e-59 PRA1.B3 prenylated RAB acceptor 1.B3 (.1) AT4G00005 95 / 1e-24 PRA1 (Prenylated rab acceptor) family protein (.1) AT1G55190 94 / 1e-23 PRA7, PRA1.F2 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) AT1G08770 87 / 1e-20 PRA1.E prenylated RAB acceptor 1.E (.1) AT1G04260 85 / 3e-20 PRA1.D, MPIP7, MPI7 PRENYLATED RAB ACCEPTOR 1.D, CAMV movement protein interacting protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026404 [exp] 308 / 3e-107 AT2G38360 253 / 5e-86 prenylated RAB acceptor 1.B4 (.1) Lus10012224 [exp] 212 / 6e-69 AT2G38360 310 / 3e-108 prenylated RAB acceptor 1.B4 (.1) Lus10002853 [exp] 208 / 3e-67 AT2G38360 305 / 4e-106 prenylated RAB acceptor 1.B4 (.1) Lus10017425 [exp] 203 / 2e-65 AT2G38360 281 / 9e-97 prenylated RAB acceptor 1.B4 (.1) Lus10007533 [exp] 198 / 7e-64 AT2G38360 281 / 6e-97 prenylated RAB acceptor 1.B4 (.1) Lus10009842 [exp] 198 / 8e-64 AT2G38360 278 / 1e-95 prenylated RAB acceptor 1.B4 (.1) Lus10022680 [exp] 163 / 1e-50 AT2G38360 232 / 1e-78 prenylated RAB acceptor 1.B4 (.1) Lus10024861 [exp] 109 / 4e-29 AT1G08770 132 / 2e-38 prenylated RAB acceptor 1.E (.1) Lus10014234 [exp] 104 / 1e-27 AT2G38360 164 / 1e-51 prenylated RAB acceptor 1.B4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G183300 [exp] 220 / 2e-72 AT3G56110 239 / 9e-81 prenylated RAB acceptor 1.B1 (.1.2) Potri.019G124100 [exp] 213 / 1e-69 AT5G05380 140 / 8e-42 prenylated RAB acceptor 1.B3 (.1) Potri.008G074000 [exp] 204 / 4e-66 AT3G56110 213 / 2e-70 prenylated RAB acceptor 1.B1 (.1.2) Potri.008G074033 [exp] 204 / 4e-66 AT3G56110 213 / 2e-70 prenylated RAB acceptor 1.B1 (.1.2) Potri.006G104400 [exp] 196 / 7e-63 AT2G38360 206 / 5e-67 prenylated RAB acceptor 1.B4 (.1) Potri.016G126400 [exp] 194 / 7e-62 AT2G38360 209 / 2e-68 prenylated RAB acceptor 1.B4 (.1) Potri.005G219100 [exp] 131 / 1e-37 AT1G55190 132 / 8e-39 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Potri.005G054700 [exp] 126 / 7e-36 AT1G08770 137 / 1e-40 prenylated RAB acceptor 1.E (.1) Potri.002G044000 [exp] 120 / 1e-33 AT1G55190 130 / 4e-38 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Potri.002G043800 [exp] 110 / 1e-29 AT1G55190 136 / 1e-40 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03208 [flax] [poplar] PRA1 PRA1 family protein
Representative CDS sequence Show only first row Show all	>Lus10042246 pacid=23153626 polypeptide=Lus10042246 locus=Lus10042246.g ID=Lus10042246.BGIv1.0 annot-version=v1.0 ATGACCTCGGCTCCTTCGATTCCTCTCTCCAGCCAAGATTCCGGCGCCGCCGCCTCCTCCGCTATGCCTCCTTCAGTCGTCGCCGCGGTCCGCTCCTTCG TCGGCAGGCTCTACTCCTCAGTCAGCCAATCGCTGTCCAACCGCCGCCCGTGGACGGAACTCATTGACCGCTCCGCCTTCTCAAGGCCGGAATCCCTATC CGACGCCACCACCAGGATACGCAAGAACTACTCCTACTTCCGCGTCAACTACACCACACTGCTTGCGATCGTCCTCGCCGTCTCCCTAATCTCCCATCCT TTCTCTCTCATCACTCTCCTCTCCCTGCTTGCGGCGTGGCTGTTCCTCTACTCGTTCCGCCCCTCGGATCAGCCGCTGGTGGTGATGGGCCGGACTTTCT CTGACAGAGAGACGCTCGGAATCTTGATGCTGGTGACTGTGGTGGTGATCTTCTTGACGAGCGTCGGATCGCTACTGATATCGGCGACGATGGTTGGAGT CGCGATTGTTTGCGTCCACGGGGCGTTTAGGGATCCGGAAGATCTGTTCATGGATGAGCAGGAAGGAAGTGGCGCTGGACTGTTCTCGTTCATCGGTGGA TCGGCCACTGCCCCCCGCAATAGCATTGCGTCCACGGGGCGTTTAGGGATCCGGAAGATCTGTTCATGGATGAGCAGGAAGGAAGTGGCGCTGGACTGTT CTCGTTCATCGGTGGATCGGCCACTGCCGCCGGTACTAGCATGA
AA sequence Show only first row Show all	>Lus10042246 pacid=23153626 polypeptide=Lus10042246 locus=Lus10042246.g ID=Lus10042246.BGIv1.0 annot-version=v1.0 MTSAPSIPLSSQDSGAAASSAMPPSVVAAVRSFVGRLYSSVSQSLSNRRPWTELIDRSAFSRPESLSDATTRIRKNYSYFRVNYTTLLAIVLAVSLISHP FSLITLLSLLAAWLFLYSFRPSDQPLVVMGRTFSDRETLGILMLVTVVVIFLTSVGSLLISATMVGVAIVCVHGAFRDPEDLFMDEQEGSGAGLFSFIGG SATAPRNSIASTGRLGIRKICSWMSRKEVALDCSRSSVDRPLPPVLA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10042246 [exp]	0	1
AT1G51160			SNARE-like superfamily protein...		Lus10027541 [exp]	2.0	0.9347
AT4G39840			unknown protein		Lus10041688 [exp]	2.6	0.9134
AT5G16390		CAC1-A, BCCP-1,...	BIOTIN CARBOXYL-CARRIER PROTEI...		Lus10004868 [exp]	3.3	0.9490
AT1G07420		SMO2-1, ATSMO1,...	Arabidopsis thaliana sterol 4-...		Lus10016492 [exp]	3.9	0.9335
AT3G26400		EIF4B1	eukaryotic translation initiat...		Lus10011412 [exp]	4.0	0.9324
AT3G21400			unknown protein		Lus10037507 [exp]	4.0	0.9005
AT1G63850			BTB/POZ domain-containing prot...		Lus10017511 [exp]	4.5	0.8979
AT3G44610			Protein kinase superfamily pro...		Lus10020572 [exp]	4.9	0.8963
AT3G48590	CCAAT	NF-YC1, ATHAP5A...	"nuclear factor Y, subunit C1"...		Lus10022444 [exp]	6.9	0.9059
AT5G62190		PRH75	DEAD box RNA helicase (PRH75) ...		Lus10027388 [exp]	8.5	0.8854

Compare expression of checked genes

Lus10042246 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.