Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07120 783 / 0 SNX2b sorting nexin 2B (.1) AT5G58440 771 / 0 SNX2a sorting nexin 2A (.1) AT5G06140 108 / 3e-25 ATSNX1 ARABIDOPSIS THALIANA SORTING NEXIN 1, sorting nexin 1 (.1) AT5G37050 55 / 1e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026403 [exp] 943 / 0 AT5G07120 753 / 0.0 sorting nexin 2B (.1) Lus10016994 [exp] 95 / 9e-21 AT5G06140 650 / 0.0 ARABIDOPSIS THALIANA SORTING NEXIN 1, sorting nexin 1 (.1) Lus10014225 [exp] 87 / 4e-18 AT5G06140 645 / 0.0 ARABIDOPSIS THALIANA SORTING NEXIN 1, sorting nexin 1 (.1) Lus10021317 [exp] 78 / 4e-15 AT5G06140 523 / 0.0 ARABIDOPSIS THALIANA SORTING NEXIN 1, sorting nexin 1 (.1) Lus10025785 [exp] 44 / 0.0003 AT1G15240 953 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1.2.3) Lus10001495 [exp] 42 / 0.0006 AT4G32160 323 / 9e-107 Phox (PX) domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G124200 [exp] 795 / 0 AT5G07120 778 / 0.0 sorting nexin 2B (.1) Potri.006G209600 [exp] 100 / 2e-22 AT5G06140 635 / 0.0 ARABIDOPSIS THALIANA SORTING NEXIN 1, sorting nexin 1 (.1) Potri.016G076400 [exp] 99 / 5e-22 AT5G06140 664 / 0.0 ARABIDOPSIS THALIANA SORTING NEXIN 1, sorting nexin 1 (.1) Potri.001G201900 [exp] 43 / 0.0008 AT3G15920 590 / 0.0 Phox (PX) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00787 [flax] [poplar] PX PX domain CL0145 [flax] [poplar] Golgi-transport PF09325 [flax] [poplar] Vps5 Vps5 C terminal like
Representative CDS sequence Show only first row Show all	>Lus10042247 pacid=23153720 polypeptide=Lus10042247 locus=Lus10042247.g ID=Lus10042247.BGIv1.0 annot-version=v1.0 ATGGAAAACCTGGTCCTCGACGAACCGTTCGATAATCCCAACGGTAACGGAAATGCGTCGAAATCTTTTGCTGATTACCGCAGCGCCATGTCCTCCGTCG TCGAGTCGCATCATCCTCTCTCCCCACGGTTGACGCCGGCCGATTCAGATCCCTTGCTTGCTCCTCAGCCTTACCGGGATCTCCGAAACCCTAGCTCATC GCACGACAGCGCTTCCTACATTGAGCCACCAGCTTACGCCGATGTGATCTTCAGTCCGTTCGACGAGAGTTCAGGTAGCGAGATCAACGGTATTGACAGC CCCGGTAGATCATTCGATTCTCAGCTGTCTCTCTCGAGATCGCCGTCCTCCAGTTCAGATTACATCAAGATCACGGTCTCCAACCCACAGAAGGAGCAGG AGACATCGAATTCGCTAGTTCCGGGAGGTAATACCTACGTCACTTATCTGATCACGACGAGGACGAACATCCAGGAGTTCAATGGATCTGAATTCAGCGT GAGGAGGCGATTCAAGGACGTGGTTACGTTGTCGGATCGGCTTGCGGAGGCTTATCGAGGGTTCTTCATCCCGCCGAGACCGGACAAGAGTGTTGTAGAG GGTCAGGTGATGCAGAAGCAGGAGTTTGTAGAGCAGAGACGAGTTGCTTTGGAGAAGTATTTGAGGAGGCTCGTTGCTCATCCCATGATCAGGAACAGTG ATGAATTGAAGGTGTTCTTGAAGGTGCAGGGGAAGCTGCCTTTGGCTACAAGCACTGATGTGGCTTCCAGGATGCTGGATGGAGCGGTGAAGCTACCGAA GCAGTTGTTTGGTGAGGGATCTGCAGTAGCCCCGCAGGACGTTATTCAGCCAGCTAAAGGTGGGAGAGATTTGTTGAGGCTGTTTAAGGAATTGAAACAG TCAGTGGCTAATGACTGGGGTGGGTCGAGACCAGCTGTAGTGGAAGAAGATAAGGAATTTTTGGAGAAGAAGGAGAAGATGAATGAGTTTGAGCTTCAAC TCAGCAATGCTTCTCAGCAGGCTGAATCTCTTGTGAAAGCACAGCAAGATATGGGGGAGACAATGGGAGAATTGGGGTTAGCATTCATTAAATTGACAAA GTTTGAGAATGAGGAAGCTATGTTCAACTCGCAACGAGTAAGAGCAGGTGACATGAAGAATGTAGCTACTGCTGCAGTCAAAGCAAGTAGATTCTACAGG GAACTGAACGCTCAGACTGTTAAGCATTTGGATACCATTCATGAGTATCTTGGGTTGATGCTATCTGTTCATAGTGCATTTGCGGATCGCTCTAGTGCTT TGTTGACTGTGCAAACTCTCCTATCAGAATTGTCGAATCTGCATTCAAGGGCTGAAAAACTTGAAGCTGCTTCGTCAAAAATATTTGGCGGTGACAAGTC AAGGATTCGTAGGATAGAGGAGTTGAAAGAAACTATAAGACTCACCGAAGATGCTAAAAGTGTCGCAGTAAGAGAATATGAGCGGATAAAGGAAAATAAC AGGACTGAACTTGAAAGGATGGAAAGGGAAAAACACTCTGATTTCCTGAACATGTTGAAGGGATTCGTGCTTAATCAGGTTGGATACGCGGAGAAGATTG CTAACGTCTGGGGTAAAGTGGCGGAGGAGACTAGTGGGTATGCAACTGAGAGCAGTTGA
AA sequence Show only first row Show all	>Lus10042247 pacid=23153720 polypeptide=Lus10042247 locus=Lus10042247.g ID=Lus10042247.BGIv1.0 annot-version=v1.0 MENLVLDEPFDNPNGNGNASKSFADYRSAMSSVVESHHPLSPRLTPADSDPLLAPQPYRDLRNPSSSHDSASYIEPPAYADVIFSPFDESSGSEINGIDS PGRSFDSQLSLSRSPSSSSDYIKITVSNPQKEQETSNSLVPGGNTYVTYLITTRTNIQEFNGSEFSVRRRFKDVVTLSDRLAEAYRGFFIPPRPDKSVVE GQVMQKQEFVEQRRVALEKYLRRLVAHPMIRNSDELKVFLKVQGKLPLATSTDVASRMLDGAVKLPKQLFGEGSAVAPQDVIQPAKGGRDLLRLFKELKQ SVANDWGGSRPAVVEEDKEFLEKKEKMNEFELQLSNASQQAESLVKAQQDMGETMGELGLAFIKLTKFENEEAMFNSQRVRAGDMKNVATAAVKASRFYR ELNAQTVKHLDTIHEYLGLMLSVHSAFADRSSALLTVQTLLSELSNLHSRAEKLEAASSKIFGGDKSRIRRIEELKETIRLTEDAKSVAVREYERIKENN RTELERMEREKHSDFLNMLKGFVLNQVGYAEKIANVWGKVAEETSGYATESS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07120		SNX2b	sorting nexin 2B (.1)		Lus10042247 [exp]	0	1
AT4G31860			Protein phosphatase 2C family ...		Lus10042416 [exp]	1.0	0.9321
AT5G19070			SNARE associated Golgi protein...		Lus10004421 [exp]	1.4	0.9314
AT4G00750			S-adenosyl-L-methionine-depend...		Lus10041366 [exp]	1.7	0.9226
AT1G10650			SBP (S-ribonuclease binding pr...		Lus10013027 [exp]	4.6	0.8904
AT5G01520		AtAIRP2, AIRP2	ABA Insensitive RING Protein 2...		Lus10004821 [exp]	4.9	0.8856
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Lus10028797 [exp]	6.9	0.8955
AT1G18835	ZF_HD	MIF3	mini zinc finger 3, mini zinc ...		Lus10002058 [exp]	7.1	0.8826
AT3G03800		ATSYP131, SYP13...	syntaxin of plants 131 (.1)		Lus10031553 [exp]	8.2	0.8725
AT1G75410	HD	BLH3	BEL1-like homeodomain 3 (.1.2)		Lus10010633 [exp]	8.7	0.8770
AT2G20740			Tetraspanin family protein (.1...		Lus10018584 [exp]	12.7	0.8856

Compare expression of checked genes

Lus10042247 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.