Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58450 1184 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026402 [exp] 1657 / 0 AT5G58450 1090 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G152800 [exp] 1406 / 0 AT5G58450 1252 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09797 [flax] [poplar] NatB_MDM20 N-acetyltransferase B complex (NatB) non catalytic subunit
Representative CDS sequence Show only first row Show all	>Lus10042248 pacid=23153982 polypeptide=Lus10042248 locus=Lus10042248.g ID=Lus10042248.BGIv1.0 annot-version=v1.0 ATGTCGACGAAGTTCGGATATGCCGGCGGGATACCGGAGCGTCGTGTTCGACCGATATGGGACGCCATTGATTCTCGCCAGTTCAAGAACGCTCTCAAAC TCTCCACTTCACTGCTGTCCAAGTATCCCAATTCTCCTTACGCCCTGGCACTGAAGGCTCTGGTTTCGGAACGAATGGGAAAACCTGAGGAAGCTTTGTC CATATGCTTAGAGGCAAAGGAGCTTTTGTACAAGAACGACTCTCTGTTGATGGATGATCTTACTCTCAGCACACTTCAGATTGTTTTCCAACGACTTGAT CGTTTGGATTTGGCTACAAGCTGTTATGAGCATGCTTGCGGCAAATTTTCAAACAATTTGGAGCTGATGATGGGGCTTTTCAACTGCTATGTTCGTGAAT ATTCCTTTGTTAAACAGCAACAGACTGCAATTAAAATGTACAAGCTCGTTGGTGAAGAAAGGTTTTTGCTCTGGGCTATATGTAGCATCCAGTTACAGGT GTTTTGTGGAAATGGTGGAGAAAAGCTCTTATTATTGGCTGAAGGGTTACTTAAGAAGCACATTGCTTCTCACAGCTTGCATGAGCCCGAAGCTCTTATT GTCTACATCTCCATATTGGAGCAGCAAGCAAAATATGGTGATGCATTGGAACTTCTTTCTGGGAAATTGGGGTCGTTGCTAATGATTGAAGTTGATAAAC TACGGATACAGGGGAGGCTTCTTGCACATTCTGGTGACTATGCTTCTGCAGCAAATATATACCAGAAGATTTTAGAGATCTGCCCTGATGATTGGGAGGC TTTCCTACATTATCTAGGCTGCTTACTAGAGGATGGCAGCAGCTGGAGGAATGAAGCTGATTCTGATTCAATCCATTCTATTAAGCATGTTGATTGTAAA GTCTCACATTTGACAGATGATAAGTTTGAGTCTTGCATGGATAACGCCTCAGCTTTGGTGCAAAAGTTACTAGTGGACACCAATGCTGAACCTATTAGAG GACCATACTTGGCAGCCCTTGAGATTAAAAGGAGGAAGCATGTATATGGCAAGGGAAGTGATGACGAGATCGTGGAGGCTCTAATTGAATATTATCTCAA GTTCGGTCACTTAGCCTGCTTCTCTTCTGATATTATGGTGTTTGTTCAACTCTTGACTCCGGAAAAAAAGACGGAGTTTGTGGATAAGTTGGTGCAAAAT TGCGACTCCATCACATCAATTGGGACTAAAGTGCTTGGCCAATCTACGACAATATTCAAGATCAGAGAGATGATCGGAAACATGCACAAACTTCCTGTGG TTGAACTTGAGAACTTTGTTGTCGACATGGTAAATATGTTCTGTAAAAGTCTTCCGCTATCTAAAGACTTGGACCCACAAGAGAGTGTGCATGGTGGAGA GCTTTTATGCATGGCAAGCAGTTTGCTAGTTCAGTTATTCTGGAGGACAGGGAACTTTGGCTATTTCGTGGAGGCGATCATGTTGTTGGAGTTTGGGTTG ACAATACGAAGATATGTTTGGCAGTTCAAGGTCTTGCTGGTGCATCTGTATTCTCACTTGGGCGTTCTGTCTCTAGCTTATGAATGGTATAGAACCTTAG ATGTGAAGAATATTTTGACAGAAACTATCTCACATCACATTTTACCTCAGATGCTAGTATCTCCACTATGGGATGACCTAAAGAATCTACTAAAAGATTA TCTCAGGTTCATGGATGACCACTTCAGGGAATCTGCTGATCTCACCTTTCTTGCATACCGCCATAGAAACTACTCTAAAGTGATCGAGTTTGTACAATTC AAAGAACACCTGCAACGATCAGATCAGTACTTAGTTGCGAAGGTTGAAACATCAATTTTACAGCTCAAGCAAAATGCAGATTGCATTCAAGAAGAGGAGA ATGTTCTTGAAGGCCTAGATTTTGGGAATCATTTTGTTGAGCTCTCTAATGAAGTTGGGTCACAACCATTGACTTTCAACGAGGATCTCAGTTTGCGTCC TTGGTGGACTCCAACTTCAGAGAAAAACTATCTCTTAGGTCCTTTTGAAGGAATCTCTTATTATCCTAAGAAGGAACTGGCAAAAAAAAGGGAAGAGAAA GTACGGAAAGTGATTGAAAAGAAGTCACTTCTTCCTCGTCTGATCTATCTTTCGGTCCACAGTGCCTCTACAGTAAACAGAGACAATGCTGAGATGAATG GCTCTACATCTGATCCTAAAATCTCCAAGGAGTTCAAGTTTCTACTTGAGCGGTATGCGAACTTGTTGGGATCTACACTAGATGATGCAATTAAAGTTAT TTTGGGCGTCTCTAGTGGTCAAAAGTCCTCGGAGGCGTTTGGTTCAGATAGTTTGGAGTGGCTAAACTTCGCCGTGTTTTTAAATGCCTGGAACTTGAGT TCTCACGAACTCTCACATGCAGCTGGCAGCAACATCAGTCATGGTATTCTTCATGCAGTAGACACATTGCTGGTAAACCATGTTTCCGAAAAGATGAAAC TAACAGGGTCGCTCGAGCTCTCTGGATGCCGGGACTTATCGACTTTAGTTCAACTGGTGACCGAACCTTTGGCTTGGCATTGTCTCATCCTCCAATCTTG TGTTCGCTCCTCCATTCCATCCGGGAAGAAGAAGAAGAAAGGTGGACCCACCGACCATCTCAACGCCCAATTATTGAACGCCCTTCGAGATTCAACCCAG TCTCTATATGGCATCATAGAAGAGGTAACCAAATGGCTGAGGAATCAGATTAACACACCTGAGGAAAACCAGATGGACTTGCTACTTTCTTCTATATTGA ACAAAGGACAAGACTCAGGACCCGGGCGTGCTTTCCAGGCTCTGGGAAGTTTAATACCGTCCCTCAACGAGGCTGATGTCGGCGAAAGGATCTACCGTGC ATTGAAGTCTTGGAGTGCTGTTGATGTTGCAAGGAAGGTAGTGACAGGGAATTCTGTGGTATTATCCCGGTTCCTTGAAATATGCACGTCGAAGATGAAG TCGTTGCAGAATCTGAGACAGAAGATCGCTCAAGTCTGA
AA sequence Show only first row Show all	>Lus10042248 pacid=23153982 polypeptide=Lus10042248 locus=Lus10042248.g ID=Lus10042248.BGIv1.0 annot-version=v1.0 MSTKFGYAGGIPERRVRPIWDAIDSRQFKNALKLSTSLLSKYPNSPYALALKALVSERMGKPEEALSICLEAKELLYKNDSLLMDDLTLSTLQIVFQRLD RLDLATSCYEHACGKFSNNLELMMGLFNCYVREYSFVKQQQTAIKMYKLVGEERFLLWAICSIQLQVFCGNGGEKLLLLAEGLLKKHIASHSLHEPEALI VYISILEQQAKYGDALELLSGKLGSLLMIEVDKLRIQGRLLAHSGDYASAANIYQKILEICPDDWEAFLHYLGCLLEDGSSWRNEADSDSIHSIKHVDCK VSHLTDDKFESCMDNASALVQKLLVDTNAEPIRGPYLAALEIKRRKHVYGKGSDDEIVEALIEYYLKFGHLACFSSDIMVFVQLLTPEKKTEFVDKLVQN CDSITSIGTKVLGQSTTIFKIREMIGNMHKLPVVELENFVVDMVNMFCKSLPLSKDLDPQESVHGGELLCMASSLLVQLFWRTGNFGYFVEAIMLLEFGL TIRRYVWQFKVLLVHLYSHLGVLSLAYEWYRTLDVKNILTETISHHILPQMLVSPLWDDLKNLLKDYLRFMDDHFRESADLTFLAYRHRNYSKVIEFVQF KEHLQRSDQYLVAKVETSILQLKQNADCIQEEENVLEGLDFGNHFVELSNEVGSQPLTFNEDLSLRPWWTPTSEKNYLLGPFEGISYYPKKELAKKREEK VRKVIEKKSLLPRLIYLSVHSASTVNRDNAEMNGSTSDPKISKEFKFLLERYANLLGSTLDDAIKVILGVSSGQKSSEAFGSDSLEWLNFAVFLNAWNLS SHELSHAAGSNISHGILHAVDTLLVNHVSEKMKLTGSLELSGCRDLSTLVQLVTEPLAWHCLILQSCVRSSIPSGKKKKKGGPTDHLNAQLLNALRDSTQ SLYGIIEEVTKWLRNQINTPEENQMDLLLSSILNKGQDSGPGRAFQALGSLIPSLNEADVGERIYRALKSWSAVDVARKVVTGNSVVLSRFLEICTSKMK SLQNLRQKIAQV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58450			Tetratricopeptide repeat (TPR)...		Lus10042248 [exp]	0	1
AT1G10490			Domain of unknown function (DU...		Lus10005792 [exp]	2.2	0.9380
AT5G26180			S-adenosyl-L-methionine-depend...		Lus10026452 [exp]	3.3	0.9142
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Lus10025853 [exp]	4.9	0.9331
AT5G51200		EMB3142	EMBRYO DEFECTIVE 3142, Protein...		Lus10030088 [exp]	7.3	0.9334
AT3G06530			ARM repeat superfamily protein...		Lus10039121 [exp]	8.0	0.9296
AT5G06350			ARM repeat superfamily protein...		Lus10029399 [exp]	8.9	0.9028
AT3G19740			P-loop containing nucleoside t...		Lus10040976 [exp]	8.9	0.9069
AT5G25150		TAF5	TBP-associated factor 5 (.1)		Lus10007449 [exp]	9.6	0.8860
AT1G16480			Tetratricopeptide repeat (TPR)...		Lus10017082 [exp]	10.0	0.8991
AT3G52140			tetratricopeptide repeat (TPR)...		Lus10037481 [exp]	10.2	0.9135

Compare expression of checked genes

Lus10042248 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.