Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37055 224 / 8e-76 ATSWC6, SEF SERRATED LEAVES AND EARLY FLOWERING, HIT-type Zinc finger family protein (.1) AT4G38495 40 / 0.0001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026399 [exp] 324 / 2e-115 AT5G37055 245 / 4e-84 SERRATED LEAVES AND EARLY FLOWERING, HIT-type Zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G152600 [exp] 275 / 9e-96 AT5G37055 172 / 2e-55 SERRATED LEAVES AND EARLY FLOWERING, HIT-type Zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0175 [flax] [poplar] TRASH PF04438 [flax] [poplar] zf-HIT HIT zinc finger
Representative CDS sequence Show only first row Show all	>Lus10042253 pacid=23153899 polypeptide=Lus10042253 locus=Lus10042253.g ID=Lus10042253.BGIv1.0 annot-version=v1.0 ATGGATGATGAGACTCCGAATTCTCTCCGGCGGATGTCAAGCCGGACTCGTAAAGTTGCTCCTAAGATGGCTGCAGCTCTTGCCAGCACCGATAATCGAA ATCAGGCAGCTCTTGCTCGTCTCGAGGCACTGGAAAATGACAATGCCGGCTTAGAAACAGTAGAACCTGTTGACGATGACGAGGCTTCTCTTGATGAGGA TGATGAAGGATTTGTTCAAAAGAAGATGAAAGGCACCAAACGTAAAACTCGCCAAGCGAAAGCTCTTGAGATTAATGCTAGGAAGCCACCAAGAAACTTT CTTGAACTCTTACAAGAGGCAAATCTGGAGTCTTTGCCACCACATGTCCCATCTTACTTGAGAGCAGCAGTAGGGCCTCCGAGTTCTACATGCCGTCGGC ATTTCTGCACAGTTTGTGGTTTTGCTTCCACTTATACTTGTGTGAAGTGTGGTATGCGTTTTTGTTCGATTCGTTGCCAGACCATACATGATGATACCCG TTGCCTCAAGTTCGTTGCCTGA
AA sequence Show only first row Show all	>Lus10042253 pacid=23153899 polypeptide=Lus10042253 locus=Lus10042253.g ID=Lus10042253.BGIv1.0 annot-version=v1.0 MDDETPNSLRRMSSRTRKVAPKMAAALASTDNRNQAALARLEALENDNAGLETVEPVDDDEASLDEDDEGFVQKKMKGTKRKTRQAKALEINARKPPRNF LELLQEANLESLPPHVPSYLRAAVGPPSSTCRRHFCTVCGFASTYTCVKCGMRFCSIRCQTIHDDTRCLKFVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37055		ATSWC6, SEF	SERRATED LEAVES AND EARLY FLOW...		Lus10042253 [exp]	0	1
AT4G18230			unknown protein		Lus10032224 [exp]	8.3	0.7476
AT3G20890			RNA-binding (RRM/RBD/RNP motif...		Lus10030140 [exp]	62.5	0.6849
AT3G14820			GDSL-like Lipase/Acylhydrolase...		Lus10014257 [exp]	95.3	0.6553
AT5G03670			unknown protein		Lus10023875 [exp]	100.5	0.6888
AT3G06240			F-box family protein (.1)		Lus10038603 [exp]	107.9	0.6497
AT5G51740			Peptidase family M48 family pr...		Lus10015019 [exp]	207.0	0.6484

Compare expression of checked genes

Lus10042253 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.