Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37060 619 / 0 ATCHX24 cation/H+ exchanger 24, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 24, cation/H+ exchanger 24 (.1) AT5G58460 586 / 0 ATCHX25 cation/H+ exchanger 25, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 25, cation/H+ exchanger 25 (.1) AT2G13620 392 / 2e-123 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT1G06970 308 / 4e-92 ATCHX14, CHX14 cation/hydrogen exchanger 14 (.1) AT5G22900 301 / 2e-89 ATCHX3 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) AT2G30240 295 / 3e-87 ATCHX13 CATION/H+ EXCHANGER 13, Cation/hydrogen exchanger family protein (.1) AT3G44900 293 / 2e-86 ATCHX4 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) AT5G41610 281 / 4e-82 ATCHX18 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) AT3G53720 279 / 3e-81 ATCHX20 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) AT3G17630 278 / 3e-81 ATCHX19 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026398 [exp] 1538 / 0 AT5G37060 649 / 0.0 cation/H+ exchanger 24, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 24, cation/H+ exchanger 24 (.1) Lus10031283 [exp] 1169 / 0 AT5G37060 672 / 0.0 cation/H+ exchanger 24, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 24, cation/H+ exchanger 24 (.1) Lus10031852 [exp] 1064 / 0 AT5G37060 605 / 0.0 cation/H+ exchanger 24, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 24, cation/H+ exchanger 24 (.1) Lus10030013 [exp] 386 / 7e-121 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10035312 [exp] 376 / 8e-117 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10026408 [exp] 300 / 6e-89 AT2G13620 441 / 2e-142 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10013423 [exp] 298 / 3e-88 AT3G44900 375 / 2e-117 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10032332 [exp] 290 / 4e-85 AT4G23700 1030 / 0.0 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) Lus10040963 [exp] 286 / 9e-84 AT3G44900 376 / 2e-117 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G282800 [exp] 682 / 0 AT5G37060 604 / 0.0 cation/H+ exchanger 24, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 24, cation/H+ exchanger 24 (.1) Potri.009G078000 [exp] 649 / 0 AT5G37060 677 / 0.0 cation/H+ exchanger 24, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 24, cation/H+ exchanger 24 (.1) Potri.007G105200 [exp] 390 / 1e-122 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.019G123700 [exp] 371 / 1e-115 AT2G13620 536 / 4e-179 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.016G127800 [exp] 323 / 4e-98 AT5G01680 436 / 6e-142 cation/H+ exchanger 26, ARABIDOPSIS THALIANA CATION/HYDROGEN EXCHANGER 26, cation/H+ exchanger 26 (.1) Potri.019G123800 [exp] 306 / 9e-92 AT2G13620 443 / 5e-144 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.001G096320 [exp] 303 / 2e-90 AT5G41610 1069 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.013G142301 [exp] 303 / 3e-90 AT5G41610 1067 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.010G183000 [exp] 301 / 8e-90 AT2G13620 474 / 8e-156 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.018G098300 [exp] 296 / 7e-88 AT5G22900 470 / 3e-154 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF00999 [flax] [poplar] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Lus10042254 pacid=23153806 polypeptide=Lus10042254 locus=Lus10042254.g ID=Lus10042254.BGIv1.0 annot-version=v1.0 ATGGTTAGGATGGAACCTGCAACAGGCACCGGATCAGGATTATCGTCGTTCTCTCTCATCGGAAGCCTTTTCAGCGGCTATTTTGACGGCGTCGATTTTG ATCAGAATGATCACCATCTCCCTACCGGCTTAATTCAGTCGGTTAACAAGATGGACGTCGTTTATCGTGCCGCCGTGTCCGCAAATGATTCGGCACCGGT GATGGCTGTTCCTCATATTCCGATACTATGTCACAGGACGGGGCCTATCCCGACCGAAAACATATTCTACGCGGATAATATTCTACATTTTCCGTTCAAG ATCGTGCTTTTGCAGGCGGTGATTATCCTTGTACTCACTAGAATAGTGAGATGCATTCTCAAGCCTCTCAAGCAACCTAGAGTTGTTTCTGATATCATCG GTGGCATAATCATGGGTCCATCGGGATTAGGCCGAAGCAAGAAATTAGCAGCGATATTGATGCCACCGAATGCCCAGTTCGTAGCGAAAAACCTCGGCCT CATGGGCTTCATGTTCTTCCTCTTCCTAAGCGGAGTAAAAATGGACATCTCGGTCATCAAAAAATCAGGAAAGAGAGAATGGCTACTCGCATTAATCGGT ATGGCAATCCCGATCATCTTACTCACCACAGTATCCATCATGATCCGCCCGACCATGGACCCACAGCTCGCCAAGGTCTCCTCAATCGGAGCAATCGTCG CCCTGCTCTCCATCTCAGCTTTCTACGTCATCCACCCTATCCTCCAAGAGATGAACATGCTCAGCTCCGAGATGGGCCGGATCGCGCTCTCGACGTCGAT AATCATCGACGTCATAGGGATCATCTTCATGTTGGGGTTCGAGGTGTTGCGCCACGTGGAGTACAGCGTACAGGCCGCAATCTGGTACAACGTGTCGGCG GTGGTCATTATGATCTTCATAGGGACCACCGTGCGCAGGGTGGTGAGGTGGATCGTGGACCAGCACCCGGTGGGCCAGCCCATAAAGCAGACCTATATAG TGGCGTTGCTGTTGAGCTCGATGGTCGTGGGCTTCTTGTGTGACATGTTCGGGATCGGGATCGCGAACGGGTCGTTTTGGTTGGGACTTGCGATCCCCGA TGGGCCGCCATTGGGTTCGACGATTGTGGACCGGAGCGAGACGTTCATACTGCATATGTTTATGCCGTTCTCATATATCTTGATTGGGATGCTGGTGGAT GTGTTTTCGATAGCGACGATTCCTTGGGCCAGCTTGAGCCCGTTCTTCATAATCATAATGACTGGGTTCGTGTCGAGGTTTCTTGCGAATATGATTGCTT CTATGGTGATGGAGATGTCGATGAAGGAGAGGATTAGTTTGAGTCTTATGCTCTGCTTGAGAGGTCAGATGGAGTTCATCATTGGTGTCTTGTGGCTCGA CAAAGGGATAATAGGGATCCCATCATTCTCAATGTTTGTACTCCTCTCAACCGCATCAACCTTCATCGTGACACCAATCTTCCGCTCCATCTACGACACG ACGAGGCCGTACATGATCAGCAAATGGAGGACGATCCAACACACTCCGGCCAACTCCGACCTCAAGCTCCTCCTCTGCCTCAACGACCATGAAACCCTAG CCGGACTCCTCAACCTCCTCGAGTTCACCTTCCCGACCCAAAACAGCCCCTTCACCATCTACGCCCTTCACATCATCGAGATGATCGGTCGAGCTGCCCC GATCTTCGTGGACCACGAGCAGCAACGCCTCCCTACCAAGTACGCCGACTCCTACTCCATGCACAACTCCCTCAAGTTCTACCAGGACTCCAAGAACGGC CTCGTTCAGCTCCATTCTTACACTGCCATCGTTCCCAAGAGGACAATGTACCAGGACGTGTGCGAGATGGCCCTAACTCGAAAGTCCACTCTCGTACTCG TCCCTTTCCATGGAAAATGGGTCGAGTCCATGCCAGACTCAGACTCAAAAACCCTAACCTCAACGGTTCTATCCAAGATCATCGACCACGTACCCTGCTC GATTGGGGTGCTAGTCCAGAAGGGCGAGTTCAACAACCCGATGTTCGCAATCTCTGACCCGTACGCTGTCCACCACTTCATCCTCATCTTCATGGGCGGG TCCGACGCGCGCGAGGCCCTAGCCTACGCGGATAGGATGATGGCCAACCCGTGCGTGAACATGGCCGTGATACGGTTCCTCGCAGTGGAGAACCGCGGTG ACGACGAGATGGAGAGGAAGCAGGACGACGGGATGCTGCAGTGGTTCATGGCCCGGAATGAGGCCACGAGGCGAGTGGCGTACAAGGAGATCGAGGTGAA CAACGGGGAGGAGACGCTGGCGTCGATACACGCGCTGAAGAATATGGAGTACGAGATGTGGATTGTCGGGAGGGAGCGTGGGATTAATCCTGTGTTGCTT GAAGGTTTGGAGAATTGGAGTAATCACGAGGAGCTTGGTGTGATTGGGGATTATGTTTCGTCGAGTGATTTCGGGACAGAGTCGTCTGTTTTGGTTGTTC AGCAGCAGATCCTGCGTGGTGCTGAACGCAAGAAGGCTAAGTTTAGAAGCTTGTCTATGAATTACTTTTGA
AA sequence Show only first row Show all	>Lus10042254 pacid=23153806 polypeptide=Lus10042254 locus=Lus10042254.g ID=Lus10042254.BGIv1.0 annot-version=v1.0 MVRMEPATGTGSGLSSFSLIGSLFSGYFDGVDFDQNDHHLPTGLIQSVNKMDVVYRAAVSANDSAPVMAVPHIPILCHRTGPIPTENIFYADNILHFPFK IVLLQAVIILVLTRIVRCILKPLKQPRVVSDIIGGIIMGPSGLGRSKKLAAILMPPNAQFVAKNLGLMGFMFFLFLSGVKMDISVIKKSGKREWLLALIG MAIPIILLTTVSIMIRPTMDPQLAKVSSIGAIVALLSISAFYVIHPILQEMNMLSSEMGRIALSTSIIIDVIGIIFMLGFEVLRHVEYSVQAAIWYNVSA VVIMIFIGTTVRRVVRWIVDQHPVGQPIKQTYIVALLLSSMVVGFLCDMFGIGIANGSFWLGLAIPDGPPLGSTIVDRSETFILHMFMPFSYILIGMLVD VFSIATIPWASLSPFFIIIMTGFVSRFLANMIASMVMEMSMKERISLSLMLCLRGQMEFIIGVLWLDKGIIGIPSFSMFVLLSTASTFIVTPIFRSIYDT TRPYMISKWRTIQHTPANSDLKLLLCLNDHETLAGLLNLLEFTFPTQNSPFTIYALHIIEMIGRAAPIFVDHEQQRLPTKYADSYSMHNSLKFYQDSKNG LVQLHSYTAIVPKRTMYQDVCEMALTRKSTLVLVPFHGKWVESMPDSDSKTLTSTVLSKIIDHVPCSIGVLVQKGEFNNPMFAISDPYAVHHFILIFMGG SDAREALAYADRMMANPCVNMAVIRFLAVENRGDDEMERKQDDGMLQWFMARNEATRRVAYKEIEVNNGEETLASIHALKNMEYEMWIVGRERGINPVLL EGLENWSNHEELGVIGDYVSSSDFGTESSVLVVQQQILRGAERKKAKFRSLSMNYF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37060		ATCHX24	cation/H+ exchanger 24, ARABID...		Lus10042254 [exp]	0	1
AT1G66230	MYB	ATMYB20	myb domain protein 20 (.1)		Lus10004042 [exp]	4.2	1.0000
					Lus10011962 [exp]	6.0	1.0000
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Lus10012601 [exp]	7.3	1.0000
AT4G20970	bHLH	bHLH162	basic helix-loop-helix (bHLH) ...		Lus10042128 [exp]	7.7	0.7087
					Lus10022805 [exp]	8.5	1.0000
AT5G05530			RING/U-box superfamily protein...		Lus10024629 [exp]	9.5	1.0000
AT2G15220			Plant basic secretory protein ...		Lus10026579 [exp]	10.4	1.0000
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10014637 [exp]	10.9	1.0000
AT5G04350			Plant self-incompatibility pro...		Lus10029388 [exp]	12.0	1.0000
					Lus10030558 [exp]	12.7	1.0000

Compare expression of checked genes

Lus10042254 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.