Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30200 570 / 0 EMB3147 EMBRYO DEFECTIVE 3147, catalytics;transferases;[acyl-carrier-protein] S-malonyltransferases;binding (.1), catalytics;transferases;[acyl-carrier-protein] S-malonyltransferases;binding (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026397 [exp] 703 / 0 AT2G30200 598 / 0.0 EMBRYO DEFECTIVE 3147, catalytics;transferases;[acyl-carrier-protein] S-malonyltransferases;binding (.1), catalytics;transferases;[acyl-carrier-protein] S-malonyltransferases;binding (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G077800 [exp] 612 / 0 AT2G30200 564 / 0.0 EMBRYO DEFECTIVE 3147, catalytics;transferases;[acyl-carrier-protein] S-malonyltransferases;binding (.1), catalytics;transferases;[acyl-carrier-protein] S-malonyltransferases;binding (.2) Potri.001G282600 [exp] 463 / 1e-164 AT2G30200 415 / 1e-145 EMBRYO DEFECTIVE 3147, catalytics;transferases;[acyl-carrier-protein] S-malonyltransferases;binding (.1), catalytics;transferases;[acyl-carrier-protein] S-malonyltransferases;binding (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0323 [flax] [poplar] Patatin PF00698 [flax] [poplar] Acyl_transf_1 Acyl transferase domain
Representative CDS sequence Show only first row Show all	>Lus10042255 pacid=23154034 polypeptide=Lus10042255 locus=Lus10042255.g ID=Lus10042255.BGIv1.0 annot-version=v1.0 ATGGCATCTTCCCTCGCTTTCCCTGCAATTTCACCCAGCCGTCTCTCCTTCGCTGCCATCGACGGCTGCAGCCGAAATGGTGCTCGCGGATTTGGTGTCA AGAGCTTTGCACGGTCTAGGGTTTCCATGAGTGTTTCACTTGGATCGCAGACTGTTGTCGATGACTCCTTGTTCGCTGATTACAAGCCTACTTCTGCCTT TTTGTTCCCTGGTCAGGGAGCACAAGCTGTTGGAATGGGGAAGGAGGCTCAAAGCGTAGCTGCTGCTGCAGAATTGTACAAGAAGGCAAATGATATACTA GGGTATGATCTTTTAGAACTCTGTCTCGCTGGGCCGAAAGAGAAACTTGACTCTACTGTTATAAGCCAGCCTGCTATTTATGTCACAAGTCTGGCTGCAG TTGAGATGCTCCGTGCTCGTGATGGAGGCCAGCAAATAATCGATTCAGTTGACGTCACTTGTGGTCTCAGCTTAGGTGAATACACTGCTCTGGCTTTTTC TGGAGCCTTCAGCTTTGAGGACGGTCTGAAGCTGGTCAAGCTAAGGGGTGAAGCCATGCAGGAAGCTTCTGATGCCGCTAAAAGTGCCATGGTCAGTATC ATAGGGCTGGACTCGGACAAAGTTCAGCAGTTATGTGATGCAGCGAATCAAGAAGTTGACGAGGCTGAGAAAGTCCAGATAGCCAACTTCCTCTGTACTG GAAACTATGCTGTATCTGGAGGCGTAAAGGGGATTGAAGCAGTCGAAGCAAAGGCTAAATCATTCAAAGCGCGAATGACGGTGCGATTGGCTGTTGCCGG AGCTTTCCACACAAGTTTCATGGAACCAGCTGTCTCGAGATTAGAAGCTGCATTGGCGGAAACAGAGATAAGATCCCCGAGAATACCAGTCATATCAAAT GTCGATGCGCAACCGCACGCAGATCCTGCCACGATTAAGAAAATCTTGGCGCGTCAGGTGACTTCCCCTGTTCAATGGGAAACCACAGTGAAGACTCTTC TAGGCAAAGGTCTGAAGAAGAGCTATGAGTTAGGACCCGGAAAGGTCATTGCTGGAATAGTGAAAAGGATGGACAGGGGTGCTGAGCTTGAGAACATCAG TGCCTGA
AA sequence Show only first row Show all	>Lus10042255 pacid=23154034 polypeptide=Lus10042255 locus=Lus10042255.g ID=Lus10042255.BGIv1.0 annot-version=v1.0 MASSLAFPAISPSRLSFAAIDGCSRNGARGFGVKSFARSRVSMSVSLGSQTVVDDSLFADYKPTSAFLFPGQGAQAVGMGKEAQSVAAAAELYKKANDIL GYDLLELCLAGPKEKLDSTVISQPAIYVTSLAAVEMLRARDGGQQIIDSVDVTCGLSLGEYTALAFSGAFSFEDGLKLVKLRGEAMQEASDAAKSAMVSI IGLDSDKVQQLCDAANQEVDEAEKVQIANFLCTGNYAVSGGVKGIEAVEAKAKSFKARMTVRLAVAGAFHTSFMEPAVSRLEAALAETEIRSPRIPVISN VDAQPHADPATIKKILARQVTSPVQWETTVKTLLGKGLKKSYELGPGKVIAGIVKRMDRGAELENISA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30200		EMB3147	EMBRYO DEFECTIVE 3147, catalyt...		Lus10042255 [exp]	0	1
AT3G56130			biotin/lipoyl attachment domai...		Lus10009843 [exp]	1.4	0.9758
AT5G60640		ATPDI2, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10037403 [exp]	1.7	0.9744
AT3G08900		RGP3	reversibly glycosylated polype...		Lus10026676 [exp]	2.0	0.9707
AT3G56130			biotin/lipoyl attachment domai...		Lus10040959 [exp]	2.4	0.9752
AT3G47520		pNAD-MDH, MDH	plastidic NAD-dependent malate...		Lus10019096 [exp]	5.5	0.9597
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10007739 [exp]	5.7	0.9559
AT3G25860		PLE2, LTA2	PLASTID E2 SUBUNIT OF PYRUVATE...		Lus10034304 [exp]	6.7	0.9557
AT5G10160			Thioesterase superfamily prote...		Lus10015830 [exp]	7.4	0.9552
AT1G53240		mMDH1	mitochondrial malate dehydroge...		Lus10013680 [exp]	7.7	0.9606
AT5G16390		CAC1-A, BCCP-1,...	BIOTIN CARBOXYL-CARRIER PROTEI...		Lus10004868 [exp]	7.7	0.9554

Compare expression of checked genes

Lus10042255 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.