Plant FIBer expression Database

Lus10042256 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G07020 103 / 4e-28 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026396
[exp]
115 / 1e-33 AT1G07020 61 / 1e-13 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G077700
[exp]
109 / 8e-30 AT1G07020 99 / 1e-26 unknown protein
PFAM info
Representative CDS sequence
>Lus10042256 pacid=23154000 polypeptide=Lus10042256 locus=Lus10042256.g ID=Lus10042256.BGIv1.0 annot-version=v1.0
ATGAACGCCACCAACTCCCTCTCTGTTCTCCCCGACGGTAATTCTCCAACTCTCAATCGTCCTCTTCCTTTCTCTGTGCTTTTCCTATTTGGCTTCGTTC
TCAAATCTCAATCTCGCACCATTTTCCCATCTGAATCTGATCTTGAATCTTCGGCTGCAGATACCATCAACAATCCGGGGAGCGATTCCGACGCCAACAC
CGACGAGGAACCCGACTACTACCAGCCTATCTCCGCCGCTGCTGACGACGATGACGACGAAGAAACCGACGGAGAACAAGATCACGTCACAGATTCCAGT
AACCTTGAGAACGGCCATTGCTTTGGTCATGAAGCGGATGGATGGATCTCATCTCTCCATCTTAACGGCATCAAGAGCGACGACGAAGCGGGAGATGACG
TGGAAGAGACGGTGGTGAGCGAGTCGTCAGCGGCGGTGAGAGCTTTTAGGGAGGACGAGAACCGGCGGAATGCGCCGCTAACGGCGGAGAACTCGACGAG
AGTGATGGAGGCGATGCGTGGGATCTCCTTCGTAGGTTCGGCTCCTGAGTGGGCTGTCCGAGTTCCCGAAACTCAGTGGATTGATCAGATCAGAAGGATG
CGGCAATTGCCCCAACCTTCTGGTTCTGCTGCTGGAAACTAG
AA sequence
>Lus10042256 pacid=23154000 polypeptide=Lus10042256 locus=Lus10042256.g ID=Lus10042256.BGIv1.0 annot-version=v1.0
MNATNSLSVLPDGNSPTLNRPLPFSVLFLFGFVLKSQSRTIFPSESDLESSAADTINNPGSDSDANTDEEPDYYQPISAAADDDDDEETDGEQDHVTDSS
NLENGHCFGHEADGWISSLHLNGIKSDDEAGDDVEETVVSESSAAVRAFREDENRRNAPLTAENSTRVMEAMRGISFVGSAPEWAVRVPETQWIDQIRRM
RQLPQPSGSAAGN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G07020 unknown protein Lus10042256
[exp]
0 1
AT4G25670 unknown protein Lus10038842
[exp]
4.1 0.8126
AT1G21720 PBC1 proteasome beta subunit C1 (.1... Lus10004885
[exp]
4.9 0.7931
AT1G26690 emp24/gp25L/p24 family/GOLD fa... Lus10037143
[exp]
6.5 0.8071
AT3G58030 RING/U-box superfamily protein... Lus10004162
[exp]
9.2 0.7819
AT4G12590 Protein of unknown function DU... Lus10039028
[exp]
11.6 0.7915
AT4G13520 SMAP1 small acidic protein 1 (.1) Lus10023702
[exp]
12.6 0.7623
AT1G77370 Glutaredoxin family protein (.... Lus10028355
[exp]
16.4 0.8043
AT1G79390 unknown protein Lus10001838
[exp]
18.2 0.7609
AT2G07180 Protein kinase superfamily pro... Lus10040588
[exp]
19.2 0.7241
AT2G27020 PAG1 20S proteasome alpha subunit G... Lus10041296
[exp]
19.5 0.7286

Lus10042256 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.