Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30160 467 / 1e-166 Mitochondrial substrate carrier family protein (.1) AT1G07030 460 / 7e-164 Mitochondrial substrate carrier family protein (.1) AT1G07025 134 / 2e-38 Mitochondrial substrate carrier family protein (.1) AT1G34065 134 / 3e-36 SAMC2 S-adenosylmethionine carrier 2 (.1) AT4G11440 130 / 2e-33 Mitochondrial substrate carrier family protein (.1) AT1G74240 120 / 3e-31 Mitochondrial substrate carrier family protein (.1) AT4G39460 118 / 1e-30 SAMC1, SAMT1 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) AT4G32400 110 / 2e-27 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) AT3G55640 105 / 7e-26 Mitochondrial substrate carrier family protein (.1) AT5G01500 104 / 7e-25 TAAC thylakoid ATP/ADP carrier (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026395 [exp] 627 / 0 AT2G30160 483 / 5e-173 Mitochondrial substrate carrier family protein (.1) Lus10029770 [exp] 120 / 9e-31 AT5G42130 478 / 5e-169 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1) Lus10005787 [exp] 117 / 5e-30 AT4G39460 494 / 2e-177 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Lus10006812 [exp] 116 / 2e-29 AT4G39460 478 / 6e-171 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Lus10017849 [exp] 114 / 1e-28 AT1G74240 430 / 6e-151 Mitochondrial substrate carrier family protein (.1) Lus10002026 [exp] 112 / 4e-28 AT4G32400 525 / 0.0 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Lus10002902 [exp] 110 / 3e-27 AT4G32400 522 / 0.0 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Lus10004689 [exp] 107 / 1e-26 AT3G55640 482 / 1e-172 Mitochondrial substrate carrier family protein (.1) Lus10012597 [exp] 108 / 2e-26 AT5G15640 488 / 9e-173 Mitochondrial substrate carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G077600 [exp] 508 / 0 AT1G07030 425 / 4e-150 Mitochondrial substrate carrier family protein (.1) Potri.001G282400 [exp] 504 / 0 AT1G07030 426 / 1e-150 Mitochondrial substrate carrier family protein (.1) Potri.016G125200 [exp] 461 / 3e-164 AT1G07030 436 / 1e-154 Mitochondrial substrate carrier family protein (.1) Potri.003G127600 [exp] 139 / 9e-37 AT4G11440 437 / 3e-146 Mitochondrial substrate carrier family protein (.1) Potri.005G085900 [exp] 128 / 2e-34 AT4G39460 487 / 9e-175 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Potri.005G197200 [exp] 127 / 7e-34 AT4G39460 417 / 3e-147 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Potri.004G117000 [exp] 115 / 1e-29 AT5G15640 434 / 1e-153 Mitochondrial substrate carrier family protein (.1) Potri.006G252100 [exp] 115 / 2e-29 AT4G32400 493 / 4e-175 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Potri.018G029200 [exp] 115 / 4e-29 AT4G32400 483 / 2e-171 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Potri.014G095400 [exp] 113 / 2e-28 AT4G01100 599 / 0.0 adenine nucleotide transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10042258 pacid=23153575 polypeptide=Lus10042258 locus=Lus10042258.g ID=Lus10042258.BGIv1.0 annot-version=v1.0 ATGGCCACTGAAGCCACCACCGCCACCGCCGAGTTCCAGAGCCCGGCGGATTTCAGACCAGTCCCACAGCCACCGGATTTCCATCCAGAGATTATAGTGA AATCCCACGACGGCCTTCACTTCTGGCAGTTCATGATAGCCGGCTCCATCGCCGGAATGATCGAGCACATGGCCATGTTCCCAGTAGACACAATCAAGAC TCACATGCAGGCAATCGGATCCTGCCCGATCAAATCCGTAAGCATCTCTCACGCTTTGCGTTCCATTCTCCATACAGAAGGCGCATCGGGACTCTACCGC GGCATAGCCGCGATGGGCCTCGGAGCTGGCCCTGCGCACGCCGTGTACTTCTCAATGTACGAGCTTTGTAAGAAGCGGTTCTCCGGTGATAATCCGAACA ATTCGCTAGCTCATGCTGCTTCTGGAGTCTGTGCAACTATCTCCAGCGACGCCGTTTTCACTCCCATGGATATGGTGAAGCAGAGGCTGCAGCTTGGAAA GGATAGTATGTATAGAGGGGTTTGGGATTGTGTGAAGAGGGTGTTTAGGGAAGAAGGTGTCGGTGCTTTCTATGCTTCGTATAAGACTACTATTTTGATG AATGCTCCGTTTACTGCGGTTCATTTTGCGACGTATGAGGCTGTGAAGAAGGGTTTGGTGGAGGTTTCGCCGCAGAGTGCTGATGATGAGAGGTTGATTG TTCATGCTACTGCTGGAGCTGCTGCTGGTGCGCTGGCGGCTGTTGTAACAACTCCACTTGATGTGGTTAAGACCCAGTTGCAATGTCAGGGTGTTTGCGG GTGTGACAGATTCAAAAGTGGATCAATCAGCGATGTGTTTAAAACAATAGTTAAAAAGGATGGATACAGAGGCCTCCTCAGAGGTTGGGCTCCAAGGATG CTCTTCCATGCACCTGCAGCAGCCATTTGCTGGTCCACATACGAAGCCTCGAAGAACTTCTTCCAAGAACTCAATGACAACGGTAAGAGTGGTACTATCA CCTGA
AA sequence Show only first row Show all	>Lus10042258 pacid=23153575 polypeptide=Lus10042258 locus=Lus10042258.g ID=Lus10042258.BGIv1.0 annot-version=v1.0 MATEATTATAEFQSPADFRPVPQPPDFHPEIIVKSHDGLHFWQFMIAGSIAGMIEHMAMFPVDTIKTHMQAIGSCPIKSVSISHALRSILHTEGASGLYR GIAAMGLGAGPAHAVYFSMYELCKKRFSGDNPNNSLAHAASGVCATISSDAVFTPMDMVKQRLQLGKDSMYRGVWDCVKRVFREEGVGAFYASYKTTILM NAPFTAVHFATYEAVKKGLVEVSPQSADDERLIVHATAGAAAGALAAVVTTPLDVVKTQLQCQGVCGCDRFKSGSISDVFKTIVKKDGYRGLLRGWAPRM LFHAPAAAICWSTYEASKNFFQELNDNGKSGTIT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30160			Mitochondrial substrate carrie...		Lus10042258 [exp]	0	1
AT4G02720			unknown protein		Lus10022052 [exp]	1.7	0.8928
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Lus10026230 [exp]	2.6	0.8663
AT5G41950			Tetratricopeptide repeat (TPR)...		Lus10018184 [exp]	2.8	0.8646
AT3G05675			BTB/POZ domain-containing prot...		Lus10033220 [exp]	3.0	0.8874
AT2G40860			protein kinase family protein ...		Lus10002993 [exp]	3.2	0.8701
AT2G44530			Phosphoribosyltransferase fami...		Lus10012074 [exp]	4.0	0.8405
AT5G18390			Pentatricopeptide repeat (PPR)...		Lus10003575 [exp]	4.9	0.8345
AT5G55740		CRR21	chlororespiratory reduction 21...		Lus10007840 [exp]	4.9	0.8879
AT5G50280		EMB1006	embryo defective 1006, Pentatr...		Lus10042081 [exp]	5.7	0.8748
AT5G15710			Galactose oxidase/kelch repeat...		Lus10035147 [exp]	5.8	0.8256

Compare expression of checked genes

Lus10042258 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.