Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30140 166 / 1e-48 UDP-Glycosyltransferase superfamily protein (.1.2) AT2G30150 157 / 3e-45 UDP-Glycosyltransferase superfamily protein (.1) AT2G36970 86 / 6e-19 UDP-Glycosyltransferase superfamily protein (.1) AT2G28080 81 / 4e-17 UDP-Glycosyltransferase superfamily protein (.1) AT4G15480 72 / 2e-14 UGT84A1 UDP-Glycosyltransferase superfamily protein (.1) AT2G29740 67 / 8e-13 UGT71C2 UDP-glucosyl transferase 71C2 (.1) AT1G22360 66 / 3e-12 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G22380 65 / 5e-12 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G01390 63 / 3e-11 UDP-Glycosyltransferase superfamily protein (.1) AT1G22400 62 / 5e-11 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026394 [exp] 388 / 4e-135 AT2G30140 425 / 3e-146 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10042260 [exp] 180 / 3e-53 AT2G30140 410 / 3e-139 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10042261 [exp] 159 / 9e-46 AT2G30140 472 / 1e-164 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10042262 [exp] 146 / 2e-41 AT2G30150 375 / 2e-127 UDP-Glycosyltransferase superfamily protein (.1) Lus10026393 [exp] 79 / 2e-17 AT2G30140 238 / 4e-76 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10016127 [exp] 76 / 2e-15 AT2G36970 426 / 2e-147 UDP-Glycosyltransferase superfamily protein (.1) Lus10008742 [exp] 75 / 4e-15 AT2G43840 478 / 6e-167 UDP-glycosyltransferase 74 F1 (.1.2) Lus10021438 [exp] 71 / 1e-13 AT2G36970 534 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10016126 [exp] 70 / 2e-13 AT2G28080 551 / 0.0 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G282100 [exp] 291 / 6e-97 AT2G30140 475 / 5e-166 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.009G077200 [exp] 218 / 2e-68 AT2G30140 478 / 6e-167 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.001G281900 [exp] 196 / 4e-60 AT2G30140 478 / 6e-167 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.009G077400 [exp] 178 / 3e-53 AT2G30150 464 / 6e-162 UDP-Glycosyltransferase superfamily protein (.1) Potri.009G077500 [exp] 172 / 8e-51 AT2G30140 450 / 5e-156 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.001G281800 [exp] 166 / 2e-48 AT2G30150 467 / 5e-163 UDP-Glycosyltransferase superfamily protein (.1) Potri.004G214100 [exp] 84 / 3e-18 AT2G28080 545 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.006G023151 [exp] 81 / 3e-17 AT1G22400 521 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.015G071900 [exp] 77 / 6e-16 AT1G24100 427 / 5e-147 UDP-glucosyl transferase 74B1 (.1) Potri.016G021300 [exp] 76 / 1e-15 AT1G22400 522 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042259 pacid=23153490 polypeptide=Lus10042259 locus=Lus10042259.g ID=Lus10042259.BGIv1.0 annot-version=v1.0 ATGGCTTCATCCCACCTGAGCGTCTTAAAGGTGCTGATTTCCTTTGGATCCTACGAAGCAGTGATGACCAAGATGGAATCCCCGTTTGAACAGCTACTTG ATCAGCTTCAGCCGCCGGTGACTGCCATCATTGGTGACATTGAAGTCCGGTGGGCCACTGGGGTTGGAAACCGAAGGAACATCCCGGTTGCCGCCTTCTG GACCATGTCTGCTTCTTTCTTTTCGATGTTGTATCATCTTGATGCGTCTGCAAGTGCTCAGAATTTATCACCAGAGGATCTTTTAGTTTGTGGAGTTTTG TTGCCTGGTATTACTACCTCACAAGTTTCAGAACTTAAGAAGCTCTTCCAGAAGAATGATCTCAGAGTACTGCAACTGGCCATGGAATGCGTCTCCAAGG TGACAAAGGCACAGCATCTCCTCTTCACTTCCATCTACGAGCTTGAGGTCGAAACCATGGATTCTTTGTCCCAAACTTCCCCTTTTCCGGTCTACCCGAT CGGCCCAGCCATTCCATACTTGGAACTACTTCGAAACCCTACTTCAAGCAACATCCACCAATTGCTGGATAACCAACCTACACGCTCTGTAATGTACATC TCACTGGGGAGCTTCCTCTCTGTTTCGACCACCCAAATGGACGAAATCCTCGAAGGTCTTCAATCCAGTGGAGTTCGGTTCCTGTCGGTCTTCGATCCAG TGGAGTTCAATTCCTGTGGGTTGGCCGAGGTGAAGCCACACGGCTGA
AA sequence Show only first row Show all	>Lus10042259 pacid=23153490 polypeptide=Lus10042259 locus=Lus10042259.g ID=Lus10042259.BGIv1.0 annot-version=v1.0 MASSHLSVLKVLISFGSYEAVMTKMESPFEQLLDQLQPPVTAIIGDIEVRWATGVGNRRNIPVAAFWTMSASFFSMLYHLDASASAQNLSPEDLLVCGVL LPGITTSQVSELKKLFQKNDLRVLQLAMECVSKVTKAQHLLFTSIYELEVETMDSLSQTSPFPVYPIGPAIPYLELLRNPTSSNIHQLLDNQPTRSVMYI SLGSFLSVSTTQMDEILEGLQSSGVRFLSVFDPVEFNSCGLAEVKPHG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30140			UDP-Glycosyltransferase superf...		Lus10042259 [exp]	0	1
AT4G32440			Plant Tudor-like RNA-binding p...		Lus10024835 [exp]	5.1	0.9561
AT5G13760			Plasma-membrane choline transp...		Lus10039585 [exp]	9.2	0.9399
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10036372 [exp]	12.5	0.9541
AT1G04970			lipid-binding serum glycoprote...		Lus10014625 [exp]	12.6	0.9479
AT3G20250		APUM5	pumilio 5 (.1)		Lus10034808 [exp]	13.5	0.9484
AT5G26240		ATCLC-D, CLC-D	chloride channel D (.1)		Lus10002453 [exp]	14.1	0.9463
AT1G11530		ATCXXS1	C-terminal cysteine residue is...		Lus10007630 [exp]	15.8	0.9477
AT4G28540		CKL6, PAPK1	casein kinase I-like 6 (.1)		Lus10022908 [exp]	17.4	0.9352
AT2G35450			catalytics;hydrolases (.1)		Lus10015759 [exp]	19.8	0.9391
AT2G23450			Protein kinase superfamily pro...		Lus10032741 [exp]	20.9	0.9464

Compare expression of checked genes

Lus10042259 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.