Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30140 409 / 9e-139 UDP-Glycosyltransferase superfamily protein (.1.2) AT2G30150 392 / 3e-132 UDP-Glycosyltransferase superfamily protein (.1) AT2G36970 241 / 2e-73 UDP-Glycosyltransferase superfamily protein (.1) AT2G28080 218 / 8e-65 UDP-Glycosyltransferase superfamily protein (.1) AT2G43820 208 / 2e-61 SGT1, ATSAGT1, GT, UGT74F2 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) AT3G21560 204 / 3e-59 UGT84A2 UDP-Glycosyltransferase superfamily protein (.1) AT1G05680 200 / 3e-58 UGT74E2 Uridine diphosphate glycosyltransferase 74E2 (.1) AT1G05675 199 / 1e-57 UDP-Glycosyltransferase superfamily protein (.1) AT4G15480 197 / 1e-56 UGT84A1 UDP-Glycosyltransferase superfamily protein (.1) AT2G31750 196 / 1e-56 UGT74D1 UDP-glucosyl transferase 74D1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026393 [exp] 439 / 1e-153 AT2G30140 238 / 4e-76 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10026394 [exp] 425 / 3e-145 AT2G30140 425 / 3e-146 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10042261 [exp] 421 / 2e-143 AT2G30140 472 / 1e-164 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10042262 [exp] 337 / 4e-111 AT2G30150 375 / 2e-127 UDP-Glycosyltransferase superfamily protein (.1) Lus10016128 [exp] 227 / 5e-68 AT2G36970 558 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10021438 [exp] 227 / 6e-68 AT2G36970 534 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10016126 [exp] 219 / 8e-65 AT2G28080 551 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10021437 [exp] 218 / 1e-64 AT2G36970 530 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10016127 [exp] 207 / 1e-61 AT2G36970 426 / 2e-147 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G077200 [exp] 543 / 0 AT2G30140 478 / 6e-167 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.001G282100 [exp] 477 / 2e-165 AT2G30140 475 / 5e-166 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.001G281900 [exp] 461 / 6e-159 AT2G30140 478 / 6e-167 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.009G077500 [exp] 433 / 3e-148 AT2G30140 450 / 5e-156 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.001G281800 [exp] 422 / 5e-144 AT2G30150 467 / 5e-163 UDP-Glycosyltransferase superfamily protein (.1) Potri.009G077400 [exp] 404 / 9e-137 AT2G30150 464 / 6e-162 UDP-Glycosyltransferase superfamily protein (.1) Potri.009G008100 [exp] 236 / 2e-71 AT2G28080 622 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G032300 [exp] 219 / 3e-65 AT1G05675 465 / 6e-162 UDP-Glycosyltransferase superfamily protein (.1) Potri.004G179300 [exp] 215 / 8e-64 AT1G05680 446 / 1e-154 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.004G214100 [exp] 215 / 1e-63 AT2G28080 545 / 0.0 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10042260 pacid=23153453 polypeptide=Lus10042260 locus=Lus10042260.g ID=Lus10042260.BGIv1.0 annot-version=v1.0 ATGAATACTGTAATCTCCTCGCCGGAAGAAATCCGCCGCAGGGGTCACGTGGTGGCCGTACCGTACCCAGGTAGAGGCCATATCAACCCGATGCTGAACC TCTGTAACCTCCTCTCTTCTAAAAACCCCCACCTTCTCATTACCGTCGTCGTCACGGAAGAATGGCACGGCTTCCTCTCCACCGCCGGCTCCATCTTCAG TGGCAACATCCAACTCGCTTCCATACCAAACGTAATCCCGTCGGAGCTCGTCCGAGGATCGGACTTCCCGGCCTTCTACACCGCTGTGATGACAGAAATG GAAACTCCCGTCGATGAACTCCTCGATCGGATTTCCAACCCGCCAATTACTGCCCTGATCTCCGACACTGAGCTCCGTTGGGCCATCCGGATTGGTAATC GGAGGAAGATTCCTGTAGCTACGCTGTGTACTGTTCCAGCTGGAGTTTTCTCTGTGTTCCATCGATTTGCTGCCATCCAAGATTTTAAACTCCGAGATAG CGTATTAGATGAAGAAGAAATGGGTTATCGTCCTTCAAACCATGAAATTTCTCCATCGGAAATCGCCGATCTGAAAGCGATATTCCGTGGGGATGAAAGG AGAATCATGGGTCTCACTTTGGAATGCATTTCGTGGGTACCGAAAGCTCAGTATCTGCTAGTGAACTCAGTTCAGGATCTTGAACCTGAATCCTTCGACG CTTTGAAATCAGAACTCAAGCTGCCAATTTACCCGATTGGCCCAGCTATTCCTTTCTATCAGCTCAATCACAACAACACCAACACTTCTGAATCAGCTCA TGCTTATTTCAACTGGCTAGAATCTCAACCGGAGGGGTCAGTGTTGTATGTTTCATTAGGGAGCTTTCTATCCATATCGAGTAAGCAGATTGATGAACTT GCAGAAGGCCTTCTAGTCAGCTCGGTTCGGTTCCTTTGGGTGGTTAGAGGAGATCAAACCGAAAGGGCACGAGAACGGTGTGGCGAAAAGGGGATGGTGG TGCCATGGTGCGACCAGATGAAGGTGCTGAACCATTGTTCTGTAGGAGGGTTCTTGACACATTGCGGGTGGAATTCGATGCTGGAGGCCATCTACTGTGG TGTGGCGATGCTTACGTTTCCTCTGATATTCGATCAGGTTCCTAACAGTAGACGGATCGTTGAAAAATGGAAGGTTGGGTGGAGGTTGAAGAGAGATGTG GCGGAGACAGAGGAGGATGAGTTGGTTAATAGGGAGGAGATATGTGATACTGTGACGAGGTTTATGGATGGAGAGGAGAGTGAGGTTAAGGAGATGAGGA AGAGAGGTAAAGAGTTGAGAGAGGTATGTAGGGGAGCAATTGCAGAAGGTGGTTCTTCTGATAAGAACCTTGATGAGTTCATCAAGGAAATCTCAGGGAG GCACTGCGTAGCAGCTAAACAAAGGGATGGAGTCCAAGGCAGTATGTCATCTGGTGGCGATGCCGTTTCCAGGAAGAGGGCACATAAACCCCATGATGAA TCTCTGCAAGTTACTTGCTTCACAAAGAACAGACCTCCTTATTACCTTCGTAATCACAGAGGAATGGTTGGGCTACATAGGATCAGAACCAAAGGCTGA
AA sequence Show only first row Show all	>Lus10042260 pacid=23153453 polypeptide=Lus10042260 locus=Lus10042260.g ID=Lus10042260.BGIv1.0 annot-version=v1.0 MNTVISSPEEIRRRGHVVAVPYPGRGHINPMLNLCNLLSSKNPHLLITVVVTEEWHGFLSTAGSIFSGNIQLASIPNVIPSELVRGSDFPAFYTAVMTEM ETPVDELLDRISNPPITALISDTELRWAIRIGNRRKIPVATLCTVPAGVFSVFHRFAAIQDFKLRDSVLDEEEMGYRPSNHEISPSEIADLKAIFRGDER RIMGLTLECISWVPKAQYLLVNSVQDLEPESFDALKSELKLPIYPIGPAIPFYQLNHNNTNTSESAHAYFNWLESQPEGSVLYVSLGSFLSISSKQIDEL AEGLLVSSVRFLWVVRGDQTERARERCGEKGMVVPWCDQMKVLNHCSVGGFLTHCGWNSMLEAIYCGVAMLTFPLIFDQVPNSRRIVEKWKVGWRLKRDV AETEEDELVNREEICDTVTRFMDGEESEVKEMRKRGKELREVCRGAIAEGGSSDKNLDEFIKEISGRHCVAAKQRDGVQGSMSSGGDAVSRKRAHKPHDE SLQVTCFTKNRPPYYLRNHRGMVGLHRIRTKG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30140			UDP-Glycosyltransferase superf...		Lus10042260 [exp]	0	1
AT5G56580		ANQ1, ATMKK6	ARABIDOPSIS THALIANA MAP KINAS...		Lus10034986 [exp]	14.0	0.8120
AT5G46190			RNA-binding KH domain-containi...		Lus10023300 [exp]	15.3	0.8270
AT4G10730			Protein kinase superfamily pro...		Lus10017326 [exp]	18.5	0.8152
AT4G20850		TPP2	tripeptidyl peptidase ii (.1)		Lus10027482 [exp]	19.4	0.8276
AT1G72550			tRNA synthetase beta subunit f...		Lus10009382 [exp]	25.9	0.7690
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10036017 [exp]	29.3	0.7878
AT1G28260			Telomerase activating protein ...		Lus10014007 [exp]	36.7	0.8167
AT2G46290			Transducin/WD40 repeat-like su...		Lus10010332 [exp]	37.5	0.7755
AT4G02120			CTP synthase family protein (....		Lus10025043 [exp]	40.3	0.8179
AT5G67530		ATPUB49	plant U-box 49 (.1)		Lus10004731 [exp]	55.1	0.8107

Compare expression of checked genes

Lus10042260 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.