Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30150 442 / 6e-153 UDP-Glycosyltransferase superfamily protein (.1) AT2G30140 442 / 2e-152 UDP-Glycosyltransferase superfamily protein (.1.2) AT2G28080 194 / 3e-56 UDP-Glycosyltransferase superfamily protein (.1) AT2G36970 189 / 2e-54 UDP-Glycosyltransferase superfamily protein (.1) AT1G22380 175 / 5e-49 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G22400 174 / 9e-49 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G78270 174 / 1e-48 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT3G21560 171 / 1e-47 UGT84A2 UDP-Glycosyltransferase superfamily protein (.1) AT4G15480 170 / 3e-47 UGT84A1 UDP-Glycosyltransferase superfamily protein (.1) AT2G31750 169 / 3e-47 UGT74D1 UDP-glucosyl transferase 74D1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042262 [exp] 526 / 0 AT2G30150 375 / 2e-127 UDP-Glycosyltransferase superfamily protein (.1) Lus10042260 [exp] 395 / 3e-133 AT2G30140 410 / 3e-139 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10026394 [exp] 374 / 6e-126 AT2G30140 425 / 3e-146 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10026393 [exp] 213 / 4e-66 AT2G30140 238 / 4e-76 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10042263 [exp] 206 / 2e-64 AT2G30140 156 / 4e-46 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10042264 [exp] 182 / 2e-55 AT2G30140 153 / 6e-45 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10021438 [exp] 189 / 3e-54 AT2G36970 534 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10021437 [exp] 185 / 9e-53 AT2G36970 530 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10010712 [exp] 182 / 7e-52 AT1G24100 462 / 1e-160 UDP-glucosyl transferase 74B1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G281900 [exp] 488 / 1e-170 AT2G30140 478 / 6e-167 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.001G282100 [exp] 438 / 3e-151 AT2G30140 475 / 5e-166 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.009G077200 [exp] 438 / 4e-151 AT2G30140 478 / 6e-167 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.001G281800 [exp] 437 / 1e-150 AT2G30150 467 / 5e-163 UDP-Glycosyltransferase superfamily protein (.1) Potri.009G077500 [exp] 409 / 1e-139 AT2G30140 450 / 5e-156 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.009G077400 [exp] 395 / 3e-134 AT2G30150 464 / 6e-162 UDP-Glycosyltransferase superfamily protein (.1) Potri.009G008100 [exp] 186 / 2e-53 AT2G28080 622 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.004G214100 [exp] 181 / 2e-51 AT2G28080 545 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.016G021000 [exp] 180 / 5e-51 AT1G22360 561 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.006G023151 [exp] 177 / 6e-50 AT1G22400 521 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10042261 pacid=23153533 polypeptide=Lus10042261 locus=Lus10042261.g ID=Lus10042261.BGIv1.0 annot-version=v1.0 ATGTTTCCCGGGCAAGAGAACTCGACGGCCGACTGTGTCGGCGCCGGCGCTACCTGCCACATAGTGGCGATGCCTTATCCAGGGAGAGGACACATCAACC CAATGATGAACCTCTGCCACAGCCTCTCATCCAAACACCCAAACATCCTAATCACCTTCGTCCTCACCGAAGAATGGCTCGGTATACTCGGAGAAGAAAC CACCACCAACGCCGGCAAGAACAACATCCGGTTCGCCACGGTACCCAACGTCATCCCGTCTGAGCTAGTACGGGCGAAGGATTTCAAGGGATTCGTCGAA GCGGTCTTCACAAAGTTGCCAGCTCCTTTCGAAAAGGTTCTCGACAGGCTGCTAGAGTCACAGCCGGTGACCGCCATCATCGCCGACACATACTTGCCGC TGATCTGTGAAATCGGGGTCCGCCGCGGAATTCCCGTGGCGTCTCTGTGGACGATGTCGGCAACTGTCTTCTCCGTTTTGCTCCACTTTGACCTCGTCCG TCAGCACCGCCATTTCCCGATCGATGATTTCTCAGGGATTGAAGAAGAGAAGGTGGATTACATACCAGGTCTTTCCCCAACGCGAATCGTCGACCTTCAA CCATTCTTGATCAGCAGAATCGGAGTCATGGATAAAGCTTTGCAATCGGTTTCCCTTGTCTCCAAACTGCAGTATCTCCTCTTCACTTCACCATACGAGC TCGAACCAAAGCTCTTCGACGCACTGAAAACCCATTTCCAGATTCCTGTCTACCCAATTGGTCCTTCAATTCCACATCCGAAACTCGCTGCCGCCACTGG CCGAGGAATTGATTACTTCGATTGGCTAGATGCTCAGCCCAAAGGCTCAGTGCTCTACATCTCAATGGGGAGCTTCCTCTCTGCCTCCGAATCCCAAACG GAGGAGATTGTCGCTGGAGTTGTGAGCAGCGGCGTTCGTTTCCTTCTCGTGGCCAGAGGAGACGCGATGGTTGCCGCTGCCGCCTCTGCCTCCGACGGCA GGAAGGGGATAGTAGTTCCCTGGTGCGACCAATTGAGGGTGCTCTGCCACGGTTCGGTCGGTGGGTTTTGGACGCACTGCGGGTTGAATTCGACGCTGGA GGGTGTTTATGCGGGAGTTCCGATGTTGTGCTGGCCTTTGTGGTGGGATCAAATACCTAACTGTAAGGCGATCGTGGATGATTGGAGAATTGGGTGGAGA GTGCAGAGTAGGAACAGAGGCGCGGGGGGAGGGGAGTTGGTGAGACGGGAGGAGGTTGCGGCGGTGGTGAAGAGATTCATGGATGCGGAGGACGAGAATG ATGAAGTGAGGGAGATGAGGAAGAGGGCTTTGGGACTCGGAGAGGATTGTCGAGCGGCGGTGGCGGTTGGTGGGACGTCGAATTTGACGTTGGATTCCTT CGTGAGGGACATTTCTAAGTAG
AA sequence Show only first row Show all	>Lus10042261 pacid=23153533 polypeptide=Lus10042261 locus=Lus10042261.g ID=Lus10042261.BGIv1.0 annot-version=v1.0 MFPGQENSTADCVGAGATCHIVAMPYPGRGHINPMMNLCHSLSSKHPNILITFVLTEEWLGILGEETTTNAGKNNIRFATVPNVIPSELVRAKDFKGFVE AVFTKLPAPFEKVLDRLLESQPVTAIIADTYLPLICEIGVRRGIPVASLWTMSATVFSVLLHFDLVRQHRHFPIDDFSGIEEEKVDYIPGLSPTRIVDLQ PFLISRIGVMDKALQSVSLVSKLQYLLFTSPYELEPKLFDALKTHFQIPVYPIGPSIPHPKLAAATGRGIDYFDWLDAQPKGSVLYISMGSFLSASESQT EEIVAGVVSSGVRFLLVARGDAMVAAAASASDGRKGIVVPWCDQLRVLCHGSVGGFWTHCGLNSTLEGVYAGVPMLCWPLWWDQIPNCKAIVDDWRIGWR VQSRNRGAGGGELVRREEVAAVVKRFMDAEDENDEVREMRKRALGLGEDCRAAVAVGGTSNLTLDSFVRDISK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30140			UDP-Glycosyltransferase superf...		Lus10042261 [exp]	0	1
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10005951 [exp]	1.4	0.9844
AT5G17000			Zinc-binding dehydrogenase fam...		Lus10004379 [exp]	1.7	0.9839
AT4G27290			S-locus lectin protein kinase ...		Lus10038552 [exp]	2.0	0.9746
AT4G37990		CAD-B2, ATCAD8,...	CINNAMYL-ALCOHOL DEHYDROGENASE...		Lus10025706 [exp]	2.0	0.9840
AT4G01870			tolB protein-related (.1)		Lus10038052 [exp]	2.2	0.9728
AT1G47530			MATE efflux family protein (.1...		Lus10042130 [exp]	3.0	0.9682
AT3G02100			UDP-Glycosyltransferase superf...		Lus10003455 [exp]	3.3	0.9674
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Lus10026178 [exp]	3.7	0.9704
AT1G07250		UGT71C4	UDP-glucosyl transferase 71C4 ...		Lus10003805 [exp]	4.5	0.9561
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10021102 [exp]	4.9	0.9704

Compare expression of checked genes

Lus10042261 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.