Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30140 353 / 2e-118 UDP-Glycosyltransferase superfamily protein (.1.2) AT2G30150 352 / 3e-118 UDP-Glycosyltransferase superfamily protein (.1) AT2G36970 186 / 7e-54 UDP-Glycosyltransferase superfamily protein (.1) AT2G28080 176 / 5e-50 UDP-Glycosyltransferase superfamily protein (.1) AT1G22380 172 / 2e-48 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT2G31750 168 / 2e-47 UGT74D1 UDP-glucosyl transferase 74D1 (.1) AT1G22360 164 / 8e-46 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G22400 163 / 4e-45 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G78270 160 / 4e-44 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT3G21560 160 / 4e-44 UGT84A2 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042261 [exp] 541 / 0 AT2G30140 472 / 1e-164 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10042260 [exp] 323 / 9e-106 AT2G30140 410 / 3e-139 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10026394 [exp] 303 / 7e-99 AT2G30140 425 / 3e-146 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10026393 [exp] 218 / 2e-68 AT2G30140 238 / 4e-76 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10042264 [exp] 209 / 2e-66 AT2G30140 153 / 6e-45 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10021438 [exp] 197 / 1e-57 AT2G36970 534 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10016127 [exp] 184 / 7e-54 AT2G36970 426 / 2e-147 UDP-Glycosyltransferase superfamily protein (.1) Lus10021437 [exp] 186 / 1e-53 AT2G36970 530 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10016128 [exp] 181 / 7e-52 AT2G36970 558 / 0.0 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G281900 [exp] 409 / 1e-140 AT2G30140 478 / 6e-167 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.001G281800 [exp] 362 / 6e-122 AT2G30150 467 / 5e-163 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G282100 [exp] 356 / 9e-120 AT2G30140 475 / 5e-166 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.009G077500 [exp] 352 / 7e-118 AT2G30140 450 / 5e-156 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.009G077200 [exp] 348 / 9e-117 AT2G30140 478 / 6e-167 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.009G077400 [exp] 312 / 2e-102 AT2G30150 464 / 6e-162 UDP-Glycosyltransferase superfamily protein (.1) Potri.004G214100 [exp] 198 / 3e-58 AT2G28080 545 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.009G008100 [exp] 191 / 1e-55 AT2G28080 622 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.015G071900 [exp] 173 / 3e-49 AT1G24100 427 / 5e-147 UDP-glucosyl transferase 74B1 (.1) Potri.016G021500 [exp] 168 / 4e-47 AT1G22360 501 / 3e-175 UDP-glucosyl transferase 85A2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10042262 pacid=23153930 polypeptide=Lus10042262 locus=Lus10042262.g ID=Lus10042262.BGIv1.0 annot-version=v1.0 ATGGCTCCATTTGATCGAAGGAGAAACCGCCGCCCCGCGAACAATAACAACAACAACATCCGATTCATCACAATACCAAACGTCATCCCGTCGGAGCTAA TCCGGGGGAAGGATTTCAAGGGGTTTCTCGAAGCCGTAGGCACCAAGTTGCAAGCCCCCTTCGAAAAGGTTCTGGACGGACTGCTACCGTTGCCGGTGAA TGTTATCATCACCGATACATACTTGCCGTGGATGTGCGATGTCGGCAGCAGCAGGGGAATCCCCGTTGCATCACTGTGGACGATGCCTGCAACTGTTTTC TCTGTGTTCCTTCACTTCGACCTCCTCCGTCAGCACCGCCATTTCCCAATCTCCGATTTACCAGAGATTGAAGAAGAGAAAGTGGATTACATACCAGGGC TTCCCCCAACTCCGATCCTAGACATTGAACCAGTCATCACCGGACTAATTCGCCAGGAGGTTCTGCATATTGCTCTCGAATCCGTTTCCGTCGCCTCCAA AAGACTCCAATATTTCCTCTTCACTTCTCCGTACGAGCTCGAACCGCAGCTCTTCCACGCTCTGAAAACGCATTTCCGGGTTCCTGTCTACCCAATTGGT CCGTTGATTCCACATCTGAAACTTGCCGCCGCAGCCGGTGGCGTCGAAATTGATTGTTTCCATTGGCTAGATGCTCAGCCCAAAGGCTCGGTGATCTACG TCTCAATGGGTAGCTTCCTCTCTGCTTCGGATTCCCAAACAGAAGAGATCGTCGCCGGAGTTATAAGCAGCGGCGTTCGTTTCCTTCTCGTGGCGCGAGG AGACGCGATGGTTGCAGCCGCTGCAGGCGGAGGCGGCGGCGGAGGGAAGGGAAGGGTGGTTCCGTGGTGTGACCAATTGAGGGTGCTCTGCCACGGCTCG GTGGGTGGGTTCTGGACGCACTGTGGGATGAATTCGACGATGGAGGCTGTGTACGCGGGAGTCCCGATGATGTGTTGGCCGTTGTTTATCGATCAATTCA CGAATTGTAAGGCGATTGTGGATGATTGGAGAATTGGGTGGAGAGCGAGGATGATGAGGAACGGAGGCGGAGGAGATCATCAGGAGTTGGTGAGGCGGGA GGAAGTTGCGGGGATGGTGAAGAGGTTCATGGATGCGGAGGAGGAGAGCGGTGAAGTGATGGAAATGAGGAAGAGGGCGTCGGAGCTACGGGAGGTTTGC CGAGCGGCGGTGGCGATTGGTGGGTCGTCGGATTTGAGCTTGGATTGCTTCCTTAAGGACATTTGTAAATAG
AA sequence Show only first row Show all	>Lus10042262 pacid=23153930 polypeptide=Lus10042262 locus=Lus10042262.g ID=Lus10042262.BGIv1.0 annot-version=v1.0 MAPFDRRRNRRPANNNNNNIRFITIPNVIPSELIRGKDFKGFLEAVGTKLQAPFEKVLDGLLPLPVNVIITDTYLPWMCDVGSSRGIPVASLWTMPATVF SVFLHFDLLRQHRHFPISDLPEIEEEKVDYIPGLPPTPILDIEPVITGLIRQEVLHIALESVSVASKRLQYFLFTSPYELEPQLFHALKTHFRVPVYPIG PLIPHLKLAAAAGGVEIDCFHWLDAQPKGSVIYVSMGSFLSASDSQTEEIVAGVISSGVRFLLVARGDAMVAAAAGGGGGGGKGRVVPWCDQLRVLCHGS VGGFWTHCGMNSTMEAVYAGVPMMCWPLFIDQFTNCKAIVDDWRIGWRARMMRNGGGGDHQELVRREEVAGMVKRFMDAEEESGEVMEMRKRASELREVC RAAVAIGGSSDLSLDCFLKDICK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30150			UDP-Glycosyltransferase superf...		Lus10042262 [exp]	0	1
AT2G30140			UDP-Glycosyltransferase superf...		Lus10042263 [exp]	2.0	0.8797
AT2G46370		FIN219, JAR1	JASMONATE RESISTANT 1, FAR-RED...		Lus10005151 [exp]	5.7	0.8814
AT2G36890	MYB	BIT1, ATMYB38, ...	REGULATOR OF AXILLARY MERISTEM...		Lus10026543 [exp]	9.3	0.8706
AT3G18150			RNI-like superfamily protein (...		Lus10014142 [exp]	11.1	0.8117
AT4G34710		SPE2, ADC2, ATA...	arginine decarboxylase 2 (.1.2...		Lus10035464 [exp]	29.6	0.8643
AT5G52430			hydroxyproline-rich glycoprote...		Lus10032276 [exp]	31.4	0.8656
AT4G31860			Protein phosphatase 2C family ...		Lus10026885 [exp]	31.9	0.8319
AT3G04200			RmlC-like cupins superfamily p...		Lus10006549 [exp]	34.0	0.8056
AT5G08790	NAC	ATAF2, ANAC081	Arabidopsis NAC domain contain...		Lus10002083 [exp]	35.6	0.7640
AT5G38960			RmlC-like cupins superfamily p...		Lus10006550 [exp]	36.5	0.8045

Compare expression of checked genes

Lus10042262 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.