Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30140 156 / 4e-46 UDP-Glycosyltransferase superfamily protein (.1.2) AT2G30150 141 / 1e-40 UDP-Glycosyltransferase superfamily protein (.1) AT1G78270 59 / 9e-11 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT4G15480 59 / 2e-10 UGT84A1 UDP-Glycosyltransferase superfamily protein (.1) AT1G05675 59 / 2e-10 UDP-Glycosyltransferase superfamily protein (.1) AT1G22380 58 / 2e-10 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G22360 56 / 2e-09 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G22400 55 / 4e-09 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G05680 54 / 4e-09 UGT74E2 Uridine diphosphate glycosyltransferase 74E2 (.1) AT1G22370 54 / 8e-09 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042261 [exp] 217 / 3e-69 AT2G30140 472 / 1e-164 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10026394 [exp] 138 / 4e-39 AT2G30140 425 / 3e-146 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10042262 [exp] 136 / 1e-38 AT2G30150 375 / 2e-127 UDP-Glycosyltransferase superfamily protein (.1) Lus10042260 [exp] 130 / 4e-36 AT2G30140 410 / 3e-139 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10032218 [exp] 65 / 1e-12 AT1G22380 564 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10032220 [exp] 62 / 1e-11 AT1G22380 601 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10042259 [exp] 61 / 2e-11 AT2G30140 166 / 9e-49 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10024584 [exp] 60 / 5e-11 AT1G22400 570 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10013924 [exp] 58 / 4e-10 AT1G22400 551 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G077200 [exp] 156 / 5e-46 AT2G30140 478 / 6e-167 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.001G281900 [exp] 154 / 2e-45 AT2G30140 478 / 6e-167 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.001G282100 [exp] 147 / 2e-42 AT2G30140 475 / 5e-166 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.001G281800 [exp] 144 / 2e-41 AT2G30150 467 / 5e-163 UDP-Glycosyltransferase superfamily protein (.1) Potri.009G077400 [exp] 139 / 8e-40 AT2G30150 464 / 6e-162 UDP-Glycosyltransferase superfamily protein (.1) Potri.009G077500 [exp] 137 / 9e-39 AT2G30140 450 / 5e-156 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.016G021700 [exp] 59 / 2e-10 AT1G22400 524 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.016G021200 [exp] 59 / 2e-10 AT1G22400 523 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.008G062400 [exp] 58 / 2e-10 AT1G22380 344 / 8e-114 UDP-glucosyl transferase 85A3 (.1) Potri.016G020800 [exp] 58 / 2e-10 AT1G22340 446 / 1e-154 UDP-glucosyl transferase 85A7 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042263 pacid=23154023 polypeptide=Lus10042263 locus=Lus10042263.g ID=Lus10042263.BGIv1.0 annot-version=v1.0 ATGTCTGCCGGACAAGAGAACCCAAGCTCAGCTGGCGGCGGCGACAAGCCCTGCCACATAGTGGCGATGCCTTATCCAGGAAGAGGACACATTAATCAAA TGATGAACTTCTGCCGCACTCTCTTATCCAAGCACCCCAACATCCTAATCACCTTCGTCCTCACCGAAGAATGGCTCCATTTGCTCGGAGAAGAAACCGC CAACGGCGGCGGCAACAACAGCAACAACATCCGATTCACCACAATGCCCGACGTCATCCCTTCTGAGCTAGTCCGGGGGAAGGATTTCAAGGAGTTTATC GAAGCCGTAGGCACCAAGTTGCAAGCCACTTTCGAGAAGGTTCTTGATGGGTTACTACTGGCGCCGCCGGTGAACATCATCATCGCCGACTTGCCGTGGA TGTGCGATGTAGGAAGTAGCAGGGGAATCCCCGTCGCATCACTGGGGACGATGTCGGCGACTTTTTTCTCCCTGTTCCTTAATTTCGATCTCCTCCGTTA G
AA sequence Show only first row Show all	>Lus10042263 pacid=23154023 polypeptide=Lus10042263 locus=Lus10042263.g ID=Lus10042263.BGIv1.0 annot-version=v1.0 MSAGQENPSSAGGGDKPCHIVAMPYPGRGHINQMMNFCRTLLSKHPNILITFVLTEEWLHLLGEETANGGGNNSNNIRFTTMPDVIPSELVRGKDFKEFI EAVGTKLQATFEKVLDGLLLAPPVNIIIADLPWMCDVGSSRGIPVASLGTMSATFFSLFLNFDLLR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30140			UDP-Glycosyltransferase superf...		Lus10042263 [exp]	0	1
AT2G30150			UDP-Glycosyltransferase superf...		Lus10042262 [exp]	2.0	0.8797
					Lus10014817 [exp]	2.8	0.8880
AT3G18150			RNI-like superfamily protein (...		Lus10014142 [exp]	3.2	0.8427
AT5G52410			unknown protein		Lus10026416 [exp]	10.8	0.8377
AT3G11260	HD	WOX5B, WOX5	WUSCHEL related homeobox 5B, W...		Lus10040219 [exp]	14.8	0.8634
AT1G11400		PYM	partner of Y14-MAGO (.1.2.3)		Lus10002977 [exp]	32.5	0.8482
AT4G31860			Protein phosphatase 2C family ...		Lus10026885 [exp]	36.7	0.8292
AT4G25810		XTH23, XTR6	xyloglucan endotransglucosylas...		Lus10011984 [exp]	40.8	0.8241
AT2G04240		XERICO	RING/U-box superfamily protein...		Lus10034407 [exp]	49.7	0.8424
AT1G31480		SGR2	shoot gravitropism 2 (SGR2) (....		Lus10003520 [exp]	51.2	0.8292

Compare expression of checked genes

Lus10042263 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.