Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19130 752 / 0 S-locus lectin protein kinase family protein (.1) AT4G00340 484 / 9e-160 RLK4 receptor-like protein kinase 4 (.1) AT4G27290 434 / 8e-141 S-locus lectin protein kinase family protein (.1) AT4G11900 420 / 1e-134 S-locus lectin protein kinase family protein (.1) AT4G21380 417 / 2e-133 ARK3 receptor kinase 3 (.1) AT1G65790 416 / 4e-133 ARK1 receptor kinase 1 (.1) AT1G11350 416 / 4e-133 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1) AT4G21390 412 / 1e-131 B120 S-locus lectin protein kinase family protein (.1) AT1G65800 409 / 2e-130 ARK2 receptor kinase 2 (.1) AT1G61360 407 / 3e-130 S-locus lectin protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031596 [exp] 784 / 0 AT2G19130 749 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10029802 [exp] 661 / 0 AT2G19130 729 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10039732 [exp] 634 / 0 AT2G19130 647 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10039762 [exp] 598 / 0 AT2G19130 621 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10026390 [exp] 595 / 0 AT2G19130 317 / 3e-101 S-locus lectin protein kinase family protein (.1) Lus10033748 [exp] 586 / 0 AT2G19130 711 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10039733 [exp] 544 / 0 AT4G27290 615 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10028782 [exp] 542 / 0 AT4G21380 649 / 0.0 receptor kinase 3 (.1) Lus10039767 [exp] 502 / 3e-166 AT4G27290 588 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G119200 [exp] 889 / 0 AT2G19130 874 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.013G149500 [exp] 880 / 0 AT2G19130 838 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.013G121000 [exp] 875 / 0 AT2G19130 863 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.014G086900 [exp] 523 / 2e-174 AT4G00340 862 / 0.0 receptor-like protein kinase 4 (.1) Potri.001G134900 [exp] 489 / 1e-161 AT4G21390 662 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.005G014900 [exp] 485 / 1e-159 AT4G21390 660 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.005G014700 [exp] 477 / 2e-156 AT4G21390 671 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G409300 [exp] 451 / 6e-147 AT4G27290 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125050 [exp] 451 / 6e-147 AT4G27290 870 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036100 [exp] 449 / 4e-146 AT1G11340 719 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10042266 pacid=23153458 polypeptide=Lus10042266 locus=Lus10042266.g ID=Lus10042266.BGIv1.0 annot-version=v1.0 ATGAACGAATCACTCTCCGGCGACCAGACCATCGTCTCGAGCGGAGCCAAATTCGTTATGGGTTTCTTCAGCCCAGGTAACAGCTCTAACCACTATATAG GCATATGGTACAACCAAATCCCTTTGCAGACAGTAGTCTGGGTGGCCAACAGAGAATCCCCAATCTCCAATAGGTTCTCTTCCCATCTCAGAATCTCCAA GGGCAATTTGGTCCTTTTCAATGAGTCCAACCTCCCGGTTTGGTCAACTAACTTGAATTCAACCACAGCTTCTATTGTAGAAGCTGTGCTTCTGGACAAG GGGAATCTCGTCCTGCTCAACGAGTCGACTGAAGTACTTTCACTCGATCCGTTGTGGCAGAGTTTTGATCACCCGGCTCATATCTGGCTTCCCGGTGGGA AACTCGGGTTCAACAAGATAACGAAACAGAACACGATCCTTACGTCGTGGAAATCGAAAGACGACCCTGCTCCGGGCCCGTTCTCGGTCTCGTTGGACTT GAACGGTACGGACCAGTACTTAATCCTGTACAATTCGACCGATTTTTGGAAGAGCGGACCGTGGGACCCAGTCTCGCATATCTTCAGCTTGGTGCCCGAA ATGAGAGCTCTTTCCTCTCCGGAGTTGGCCAACGTGTACAACTACACATTCGTCGACAACGAGATCGAAAGCTACGCGACGTACACGTTGAACAGCTCCG CGTTCGTCTCAAGGTTCGTGATGGACGTTGGCGGACAGATTCAGCAGCTGTCCTGGATTTTGAGGTCTTCCAGCGAGTGGACCCAGTACTGGACTCAGCC TCGAGTCCAATGCGAGGTGTATGGGTATTGTGGCCCGTTCGGAAGCTGTACTCAGAAGTCTCAGCCTTTCTGTCAATGCTTGAAAGGTTTCGTCCCAAAA TCTGAGGCTGATTACCGTTCAAACGTCTTCTACGGAGGCTGCAGGAGGCGAACTGGGCTCGAATGTGGCAAGAATTCGAGTCAAGCTGAAGACCGGTTCG TCGAAAATGGTGAAATGAAACTGCCAAGCGATCCGTTGACGGTACAGTCAGGAAATGCAGAGGAATGTAAGGGGTTTTGCTTGAACAATTGTTCTTGTAC TGCTTATTCTTATAGTGGGGATAATGGATGCTTGGTTTGGTTTGGGGAGCTTCTTAATTTGGAACAAGATGTGACTGATGGTAAGACAATCTTCATCAAG GTTTCACCTTTTGAACTGTCTAGCCCCAACAACCGCCGCAATGTTGTTCTAATTGCGGCTCTTGTTGGGTCTGTTACAGTACTTGGTACTGTTTGTCTAC TTTTGTGTCTAATATCGAGAAGGAAGCGAACGATGAAGTCCGCCGTTCAAGGTTCTCTAATGGCATTCAGCTACAGAGACTTACAGTCCGCGACGAAGAA TTTTTCGGACAGACTAGGTGGAGGAGGGTTCGGTTCAGTTTATAGAGGAGTGTTAACAAACTCAAACACTGTCGTGGCGGTGAAGAAGCTCGAAGGTGTG AGTCAAGGTGAAAAGCAATTCCGGTCGGAAGTAAGCACGATCGGGACAATCCAACATGTTAACCTCGTTCGCCTCGTCGGATTCTGCTCCGAAGGCGATC ATAATAAGTTGTTAGTCTACGAACACATGCTGAATGGGTCTTTAGATTCCGTTCTTTTTCACGATCACAATAAAGGTACTCCTTCTTCCAAGTTATTAAC TTGGAAGACTAGGTACAACATTGCCCTCGGGATAGCCCGAGGATTGATGTACCTACACGAAAAATGTCGAGATTGCATCATCCACTGCGACATCAAACCC GAGAACATCTTACTAGACGCGGAAATGTACCCGAAAGTGGCTGATTTCGGGCTGGCCAAGCTAGTGGGGAGGAATTTCAGCAGAGTGTTGACGACAATGA GAGGCACCAGAGGGTACCTAGCTCCCGAATGGATCTCGGGAATGGCAGTCACTTCGAAAGTGGACGTGTTCAGTTACGGTATGATGTTGTTCGAGCTTGT TTCGGGGAGGAGGAATTCGGGGAAGTCAGAGGATGGGGTGCCGAGTTTTTTCCCAATCCAGGCGATGGATGTGATAAATGAAAACGAGGATCTGCTTAGC CTGTTGGATCCCTGGCTCGATAGGAAAGGTGATGTCGAGGAGATCGTAAGAGTGTGTAAAATCGCTTGCTGGTGTATCCAGGATCGAGAGGAACATCGGC CGAGCATGGGACAAGTGGTTCAGATTCTAGAAGGGAGTTTAGAGGTGGGATCGCCGTCGATTCCGAATGTTCTCCGGTTACTTTTGGACGACGAGGAACA GCAAACTCTGTATAGCGAATACTCATCATGTCCAGCGGCGATGCCCTATGTACCTTGCTAG
AA sequence Show only first row Show all	>Lus10042266 pacid=23153458 polypeptide=Lus10042266 locus=Lus10042266.g ID=Lus10042266.BGIv1.0 annot-version=v1.0 MNESLSGDQTIVSSGAKFVMGFFSPGNSSNHYIGIWYNQIPLQTVVWVANRESPISNRFSSHLRISKGNLVLFNESNLPVWSTNLNSTTASIVEAVLLDK GNLVLLNESTEVLSLDPLWQSFDHPAHIWLPGGKLGFNKITKQNTILTSWKSKDDPAPGPFSVSLDLNGTDQYLILYNSTDFWKSGPWDPVSHIFSLVPE MRALSSPELANVYNYTFVDNEIESYATYTLNSSAFVSRFVMDVGGQIQQLSWILRSSSEWTQYWTQPRVQCEVYGYCGPFGSCTQKSQPFCQCLKGFVPK SEADYRSNVFYGGCRRRTGLECGKNSSQAEDRFVENGEMKLPSDPLTVQSGNAEECKGFCLNNCSCTAYSYSGDNGCLVWFGELLNLEQDVTDGKTIFIK VSPFELSSPNNRRNVVLIAALVGSVTVLGTVCLLLCLISRRKRTMKSAVQGSLMAFSYRDLQSATKNFSDRLGGGGFGSVYRGVLTNSNTVVAVKKLEGV SQGEKQFRSEVSTIGTIQHVNLVRLVGFCSEGDHNKLLVYEHMLNGSLDSVLFHDHNKGTPSSKLLTWKTRYNIALGIARGLMYLHEKCRDCIIHCDIKP ENILLDAEMYPKVADFGLAKLVGRNFSRVLTTMRGTRGYLAPEWISGMAVTSKVDVFSYGMMLFELVSGRRNSGKSEDGVPSFFPIQAMDVINENEDLLS LLDPWLDRKGDVEEIVRVCKIACWCIQDREEHRPSMGQVVQILEGSLEVGSPSIPNVLRLLLDDEEQQTLYSEYSSCPAAMPYVPC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19130			S-locus lectin protein kinase ...		Lus10042266 [exp]	0	1
AT4G27290			S-locus lectin protein kinase ...		Lus10016871 [exp]	1.0	0.9688
AT1G72890			Disease resistance protein (TI...		Lus10006929 [exp]	3.5	0.9561
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022195 [exp]	3.6	0.9455
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10022591 [exp]	4.2	0.9557
AT1G20640		NLP4	Plant regulator RWP-RK family ...		Lus10014429 [exp]	7.5	0.9452
AT2G18180			Sec14p-like phosphatidylinosit...		Lus10025988 [exp]	7.5	0.9255
					Lus10033269 [exp]	8.1	0.9517
AT5G53110			RING/U-box superfamily protein...		Lus10023086 [exp]	9.2	0.9437
AT5G58630			unknown protein		Lus10040661 [exp]	10.1	0.9344
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10021489 [exp]	12.4	0.9477

Compare expression of checked genes

Lus10042266 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.