Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58470 181 / 5e-52 TAF15b TBP-associated factor 15B (.1.2) AT1G50300 61 / 1e-09 TAF15 TBP-associated factor 15 (.1) AT4G00830 47 / 2e-05 LIF2 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT5G16260 44 / 0.0002 ELF9 EARLY FLOWERING 9, RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT2G35410 42 / 0.0007 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026388 [exp] 321 / 6e-105 AT5G58470 219 / 1e-66 TBP-associated factor 15B (.1.2) Lus10012902 [exp] 65 / 5e-11 AT1G50300 388 / 4e-134 TBP-associated factor 15 (.1) Lus10030555 [exp] 64 / 2e-10 AT1G50300 393 / 8e-135 TBP-associated factor 15 (.1) Lus10005895 [exp] 42 / 0.0008 AT5G02530 185 / 8e-58 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G281300 [exp] 213 / 2e-63 AT5G58470 198 / 1e-58 TBP-associated factor 15B (.1.2) Potri.009G076600 [exp] 190 / 4e-55 AT5G58470 199 / 4e-59 TBP-associated factor 15B (.1.2) Potri.010G170700 [exp] 61 / 8e-10 AT1G50300 320 / 2e-107 TBP-associated factor 15 (.1) Potri.008G085400 [exp] 57 / 1e-08 AT1G50300 339 / 6e-115 TBP-associated factor 15 (.1) Potri.010G179000 [exp] 45 / 9e-05 AT5G16260 533 / 0.0 EARLY FLOWERING 9, RNA binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042268 pacid=23153547 polypeptide=Lus10042268 locus=Lus10042268.g ID=Lus10042268.BGIv1.0 annot-version=v1.0 ATGTCCGGTATGTACGGCCAAAACGGCGAATCCGCCGCTCCGCCTTACTCTGGCGGTGGTGGATACGGTGGTGGAGGGGGATATGGAGGCAGCGGCGGTG GAGGTGGAGGAGGAGGAGGAGGCTACGGCGGCTATGGTGGCGACCGAGGAGGTCGTGGTGGCGATAGAGGAGGTGGTGGAGGATACGGCGGTGGATCCCA AAGTCGAGGTGTAACAGGAGCGTGGCGCGGGCGGTGTTATCGAGGAGGAGGAGGAGATCGTGGCGGTAGAGGTGGTGGCCGCGGTAGTGGCAGAGATGGT GATTGGCTTTGTCCTAATCCTGGCTGTAGATGTATATTTTTTGCAATTGGATACTGTTCTAACTCGTGGAAGTCTGTGCCTTGCATACTTAGCTGTGGAA ACTCGAACTTTGCAAGAAGAACCGAGTGCAATAAGTGCAGCACGCCTTGTCCAACTGCTGCCAAAAGCGATCGCGGTGGTGAAAGCGGCAATGGTTACAA CAGAGGAGGGGGTGGCTATTCTGGTAGTCGAGGGAGTAGAGATGGAAGTTATGATGGCAATAGAAGTGGAAGTTACAGCAGTAGCGGTAGAGGTGGGGGA TACGACAGTAGAAGCGGAGGAGGAGGAGGTGGAGGTGGAAGTAGAGGTGGATCATATGGTGGTAGTCAAGTAAGAGGAGATGATGATGCTTATAATCAAG TGCCTCCACCTGCAGTTCCAGCTTATGGAAGTGCGGGAGGGAATTATGCTGCACCCCCCAACTCATATGGGGGCAATGCAATCCCGCCACCTACAAGCTA TACTGGCGGCCCTGCATCGTACCCTCCATCCTATGGTGCCCCTGCAGGTGGATATGGTGAAGCTGCTGGTGGGCGAGGTGGTCCCCCAGGTGGGTATGGT GGTGGTGGATCAAAGAGTCAGGGAGGAGGTGGTTATGGTGCTAGTACCGGGTCTAGTGATCCTCCAGCAGTTAAGCAATGTGATGAGAATTGTGATGACA CCTGTGACAACTCTAGAATCTACATATCTAATTTGCCTGCTGATGTGACTGTTGAAGAATTGCAAGAGCTGTTCGGTGGAATTGGAATGGTTGGAAAGAT TAAGCAGAAGAGGGGCTACAAGGACCAATGGCCGTGGAACATTAAGATATACACAGATGAGAAGGGCAACAATAAAGGCGATGCAGTTTTGTCATATGAG GATCCTTCTGCTGCTCATTCTGCTGGAGGCTTTTACAACAATTATGAGATGCGAGGTCAGAAAATTAGTGTTGTGATGGCAGAGAAGACAGCTTTAAGGA CTCATGATGGAGGTAGCGGCAGAGGTGGAGGGAGAGGTGGTGGCCGAGGTGGTGGTGGTGGTGGATACGGTGGAGACCGGCGGAGGGATAACTATGGTTC TGGCCCTGACAGGAATCAACATGGTGGAAACCGCTCGAGGCCATACTGA
AA sequence Show only first row Show all	>Lus10042268 pacid=23153547 polypeptide=Lus10042268 locus=Lus10042268.g ID=Lus10042268.BGIv1.0 annot-version=v1.0 MSGMYGQNGESAAPPYSGGGGYGGGGGYGGSGGGGGGGGGGYGGYGGDRGGRGGDRGGGGGYGGGSQSRGVTGAWRGRCYRGGGGDRGGRGGGRGSGRDG DWLCPNPGCRCIFFAIGYCSNSWKSVPCILSCGNSNFARRTECNKCSTPCPTAAKSDRGGESGNGYNRGGGGYSGSRGSRDGSYDGNRSGSYSSSGRGGG YDSRSGGGGGGGGSRGGSYGGSQVRGDDDAYNQVPPPAVPAYGSAGGNYAAPPNSYGGNAIPPPTSYTGGPASYPPSYGAPAGGYGEAAGGRGGPPGGYG GGGSKSQGGGGYGASTGSSDPPAVKQCDENCDDTCDNSRIYISNLPADVTVEELQELFGGIGMVGKIKQKRGYKDQWPWNIKIYTDEKGNNKGDAVLSYE DPSAAHSAGGFYNNYEMRGQKISVVMAEKTALRTHDGGSGRGGGRGGGRGGGGGGYGGDRRRDNYGSGPDRNQHGGNRSRPY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50300		TAF15	TBP-associated factor 15 (.1)		Lus10042268 [exp]	0	1
AT3G22590		PHP, CDC73	PLANT HOMOLOGOUS TO PARAFIBROM...		Lus10041198 [exp]	2.6	0.8573
AT1G65270			unknown protein		Lus10020224 [exp]	3.5	0.8417
AT5G14280	GeBP		DNA-binding storekeeper protei...		Lus10014607 [exp]	4.2	0.8200
AT1G16210			unknown protein		Lus10022649 [exp]	4.7	0.8572
AT1G30480		DRT111	DNA-DAMAGE-REPAIR/TOLERATION P...		Lus10038451 [exp]	5.3	0.8405
AT3G07030			Alba DNA/RNA-binding protein (...		Lus10022807 [exp]	5.7	0.8183
AT5G14280	GeBP		DNA-binding storekeeper protei...		Lus10032075 [exp]	8.9	0.8383
AT3G18410			Complex I subunit NDUFS6 (.1.2...		Lus10009027 [exp]	16.1	0.8288
AT5G60800			Heavy metal transport/detoxifi...		Lus10021432 [exp]	16.2	0.8217
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Lus10025406 [exp]	18.4	0.8185

Compare expression of checked genes

Lus10042268 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.