Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58480 604 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT4G17180 434 / 6e-149 O-Glycosyl hydrolases family 17 protein (.1) AT4G31140 379 / 3e-127 O-Glycosyl hydrolases family 17 protein (.1) AT3G24330 363 / 4e-121 O-Glycosyl hydrolases family 17 protein (.1) AT5G20870 363 / 6e-121 O-Glycosyl hydrolases family 17 protein (.1) AT5G58090 351 / 1e-116 O-Glycosyl hydrolases family 17 protein (.1) AT2G19440 350 / 3e-116 O-Glycosyl hydrolases family 17 protein (.1) AT1G64760 344 / 7e-114 O-Glycosyl hydrolases family 17 protein (.1.2) AT5G64790 343 / 3e-113 O-Glycosyl hydrolases family 17 protein (.1) AT3G04010 342 / 7e-113 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026387 [exp] 816 / 0 AT5G58480 516 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10039095 [exp] 443 / 2e-152 AT4G17180 727 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10001183 [exp] 382 / 3e-128 AT5G20870 628 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10043075 [exp] 379 / 4e-127 AT5G20870 631 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10031098 [exp] 370 / 1e-123 AT1G64760 694 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10028104 [exp] 353 / 2e-117 AT5G58090 729 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10040579 [exp] 352 / 3e-117 AT5G58090 729 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10002633 [exp] 346 / 2e-114 AT1G64760 681 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10020261 [exp] 344 / 9e-114 AT1G64760 676 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G076500 [exp] 701 / 0 AT5G58480 630 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.016G002800 [exp] 430 / 3e-147 AT4G17180 704 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.006G002100 [exp] 425 / 2e-145 AT4G17180 711 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G000900 [exp] 363 / 1e-120 AT4G31140 667 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.006G080600 [exp] 362 / 1e-120 AT5G58090 739 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G150400 [exp] 358 / 3e-119 AT5G58090 735 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.019G032900 [exp] 358 / 3e-119 AT1G64760 698 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.006G280700 [exp] 359 / 4e-119 AT4G31140 676 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.007G078900 [exp] 358 / 4e-119 AT5G64790 528 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G072300 [exp] 350 / 5e-116 AT3G24330 647 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [flax] [poplar] PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10042269 pacid=23154018 polypeptide=Lus10042269 locus=Lus10042269.g ID=Lus10042269.BGIv1.0 annot-version=v1.0 ATGTATCCTCCGACTCTCAACTTCATCTTCCTCCTACTGGCCATTACCGCCGCCGCCAGCTTCAACTGTGTCGAAGCCGTCGGTGTGAACTGGGGTACGA CAGCGTCCCAGCCGCTGCCGCCGCGGGAAGTGGTGGAGCTCTTGAAGTCCAACAGCATCACCAGAGTCCGCCTGTTCGACTCCGACCCGAAAGTCCTCGA AGCTCTTTCCGGGTCCAACATTGGCGTCACCGTCGGCATTCCCAATTCGATGCTCAGGAGCTTCAACTCTTCCAAGCAAGCCGTTGAGAGCTGGGTCCAC GACAATGTCACCCGCTACTTCTCCGCCGGAAAATCAGGCGTCCGTATAGAGAGCATTGCTGTGGGAGATGAACCGTTTCACAAGATGTACGGTGAACAGT TCCATCCATATGTCATTGGGGCAGCTATCAACGTTGAATTAGCCTTGGCGAAAGCAAACCTAGGGAGTGATATGAAAGTGGTGGTTCCTTGCAGTTCTGA TTCCATTCAGTCAGAATCCGGGTTACCCTCCAAGGGACATTTCAGGCCCGAGTTGAATAAAACGATGAACGAGCTGCTCTCGTTGCTCAACAAGCACCAC TCACCGTTCTACGTGACCATCTCTCCCTTTGTTAGCTTCCAGCAGGACAAGAACACCTCGCTCGACTTTGCATTGTTCAAACAGGCTGCACGTCCCCGTA GCGACAGTCGCAGAACGAACAAGAACAGCTTTGACATGAGCTATGATACTGTGGTGGCTGCATTGTCTGCTGCGGGGTTCTCCGGTATGGATATCGTTGT TGCGAAAGTAGGTTGGCCTACTGATGGAGCACCCAATGCTAGTTCACGGACTGCTGAGGAGTTCATGAAGGGACTGATGGACCATCTGCGACTGCGAGGC AAGTCCGGTACGCCGCTCAGACCTAAAAGCCCTCCCATGGAGACGTTTATATTCAGCCTTCTGGACGAGAACGAGAGAAGCATAGCGAGTGGGAATTTCG AGAGGCATTGGGGAGTGTTCACGTTTGATGGCCAGGCTAAATATCATGTTGACTTTGGGCAGGGGACTAAGGGTTTAGTGAATGCACAGAATGTTGGTTA TCTTTCTCCTAAATGGTGCGTTGTGGATAACAACAAGGACATGTCGAACGCTAGCTCGAGAGCGTTGGATGCATGTTCAGCTGCAGATTGCACTGCACTC TCGCCCGGTGGGTCATGTTCCAACATCAGCTGGCCTGGTAACATATCTTACGCGTTTAACAGTTACTACCAGCAGCATGATCAGAGGCAAGGTAGCTGTG ATTTCGGAGGTTTAGGATTGGTCACAACTGTTGATCCTTCCTTTGGTACTTGCCGGTTCTCTGTTGAGCTCAACACTTCTGGAGCTGCTGGTTCCCTTCT CAGGATCTGCATTTTCTGGTGGTTGATTCCGTTAACCATGAACAACCATCTTATTCTCATGCTGGTATAA
AA sequence Show only first row Show all	>Lus10042269 pacid=23154018 polypeptide=Lus10042269 locus=Lus10042269.g ID=Lus10042269.BGIv1.0 annot-version=v1.0 MYPPTLNFIFLLLAITAAASFNCVEAVGVNWGTTASQPLPPREVVELLKSNSITRVRLFDSDPKVLEALSGSNIGVTVGIPNSMLRSFNSSKQAVESWVH DNVTRYFSAGKSGVRIESIAVGDEPFHKMYGEQFHPYVIGAAINVELALAKANLGSDMKVVVPCSSDSIQSESGLPSKGHFRPELNKTMNELLSLLNKHH SPFYVTISPFVSFQQDKNTSLDFALFKQAARPRSDSRRTNKNSFDMSYDTVVAALSAAGFSGMDIVVAKVGWPTDGAPNASSRTAEEFMKGLMDHLRLRG KSGTPLRPKSPPMETFIFSLLDENERSIASGNFERHWGVFTFDGQAKYHVDFGQGTKGLVNAQNVGYLSPKWCVVDNNKDMSNASSRALDACSAADCTAL SPGGSCSNISWPGNISYAFNSYYQQHDQRQGSCDFGGLGLVTTVDPSFGTCRFSVELNTSGAAGSLLRICIFWWLIPLTMNNHLILMLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58480			O-Glycosyl hydrolases family 1...		Lus10042269 [exp]	0	1
AT3G21060		RBL	RbBP5 LIKE, Transducin/WD40 re...		Lus10035969 [exp]	1.0	0.9629
AT2G38560		RDO2, TFIIS	REDUCED DORMANCY 2, transcript...		Lus10025131 [exp]	2.6	0.9293
AT5G01420			Glutaredoxin family protein (....		Lus10017547 [exp]	3.2	0.9460
AT2G05990		ENR1, MOD1	MOSAIC DEATH 1, ENOYL-ACP REDU...		Lus10016274 [exp]	4.2	0.9456
AT5G57590		BIO1	biotin auxotroph 1, adenosylme...		Lus10003630 [exp]	5.0	0.9371
AT5G04130		GYRB2	DNA GYRASE B2 (.1.2)		Lus10010428 [exp]	6.6	0.9380
AT4G16490			ARM repeat superfamily protein...		Lus10014691 [exp]	7.3	0.9260
AT4G05020		NDB2	NAD(P)H dehydrogenase B2 (.1),...		Lus10002599 [exp]	8.8	0.8988
AT3G10690		GYRA	DNA GYRASE A (.1)		Lus10008940 [exp]	9.2	0.9326
AT5G55230		ATMAP65-1	microtubule-associated protein...		Lus10043178 [exp]	11.0	0.9086

Compare expression of checked genes

Lus10042269 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.