Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07080 270 / 2e-91 Thioredoxin superfamily protein (.1) AT5G01580 203 / 3e-65 OSH1 OAS HIGH ACCUMULATION 1, gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.1) AT4G12890 176 / 7e-55 Gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.1) AT4G12900 169 / 6e-52 Gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.1) AT4G12870 160 / 2e-48 Gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.1) AT4G12960 157 / 4e-47 GILT, AtGILT gamma-interferon-responsive lysosomal thiol reductase, Gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.1), Gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026384 [exp] 459 / 6e-166 AT1G07080 281 / 1e-95 Thioredoxin superfamily protein (.1) Lus10002203 [exp] 203 / 3e-65 AT5G01580 238 / 2e-79 OAS HIGH ACCUMULATION 1, gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.1) Lus10022669 [exp] 168 / 2e-51 AT1G07080 170 / 2e-52 Thioredoxin superfamily protein (.1) Lus10012503 [exp] 166 / 6e-51 AT1G07080 171 / 1e-52 Thioredoxin superfamily protein (.1) Lus10022670 [exp] 171 / 3e-49 AT4G00620 527 / 0.0 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1) Lus10012502 [exp] 154 / 6e-43 AT4G00620 442 / 6e-152 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G076200 [exp] 319 / 1e-110 AT1G07080 278 / 3e-94 Thioredoxin superfamily protein (.1) Potri.001G281004 [exp] 294 / 6e-101 AT1G07080 266 / 8e-90 Thioredoxin superfamily protein (.1) Potri.016G121900 [exp] 228 / 6e-75 AT5G01580 263 / 3e-89 OAS HIGH ACCUMULATION 1, gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.1) Potri.012G107600 [exp] 209 / 3e-67 AT1G07080 204 / 2e-65 Thioredoxin superfamily protein (.1) Potri.012G107300 [exp] 208 / 1e-66 AT1G07080 205 / 1e-65 Thioredoxin superfamily protein (.1) Potri.016G122200 [exp] 205 / 2e-65 AT1G07080 204 / 3e-65 Thioredoxin superfamily protein (.1) Potri.006G103000 [exp] 195 / 1e-61 AT1G07080 196 / 3e-62 Thioredoxin superfamily protein (.1) Potri.016G122000 [exp] 173 / 1e-53 AT1G07080 185 / 3e-58 Thioredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF03227 [flax] [poplar] GILT Gamma interferon inducible lysosomal thiol reductase (GILT)
Representative CDS sequence Show only first row Show all	>Lus10042270 pacid=23153847 polypeptide=Lus10042270 locus=Lus10042270.g ID=Lus10042270.BGIv1.0 annot-version=v1.0 ATGGCTTCTCCTCCGCGCATCTCCTCCTTCGTCTGCTTTTTGCTACTGTTTTCCTCGTTCTCTTTCAGTAATTCGTCTTCCGACACCCCCCGTTCCACGG ATTCCAGCAGCGAGAAGGTCTCTCTGGCTCTGTACTACGAGTCTCTCTGTCCATACAGTGCCAATTTCATCGTGAACTACCTGGTTCGCGTCTTCGAAGA CGACGAGCTCTTATCCATCGTCGATCTCTACCTCTCTCCCTGGGGAAACGCCAAGCTCAGATCCAATGATACCTTCGTCTGCCAGCATGGACCAGTTGAA TGCTTACTTAATACAGTGGAAGCTTGTGCCATTGATGCTTGGCCGAAACTGGATAAGCATTTTCCATTCATCTATTGCGTTGAGGAGAAGGTCTATGAAC GTAAGCCCATGGAGTGGGAGTCATGCTTTGGGGAACTGGCTTTGGATCAACAAATTATTCAGGATTGCTACGGCAGTGGATATGGCAAGAAGCTGGAATT AAAGTATGCAGCTGAAACTAATGCTCTTACGCCTGCTCATCAATATGTTCCATGGGTGGTCGTGAATGGACAGCCACTTTACGAGGACTACGAAAACTTC ATCAGTTACATCTGCAAGGCCTACAAGGGCACCGCTATTCCGAAAGCTTGCAGCGAGGCAAATGTAATCCGGAACCTAAAACCGACATCGGTTCCAGCAT GCTACAAGGACGGGCACCCGAAGATGTCCAAGCTAGCGAAGATAGTAAACTCGGCCATATCGACATGGGTGCATGCAATGGAGGGTTAA
AA sequence Show only first row Show all	>Lus10042270 pacid=23153847 polypeptide=Lus10042270 locus=Lus10042270.g ID=Lus10042270.BGIv1.0 annot-version=v1.0 MASPPRISSFVCFLLLFSSFSFSNSSSDTPRSTDSSSEKVSLALYYESLCPYSANFIVNYLVRVFEDDELLSIVDLYLSPWGNAKLRSNDTFVCQHGPVE CLLNTVEACAIDAWPKLDKHFPFIYCVEEKVYERKPMEWESCFGELALDQQIIQDCYGSGYGKKLELKYAAETNALTPAHQYVPWVVVNGQPLYEDYENF ISYICKAYKGTAIPKACSEANVIRNLKPTSVPACYKDGHPKMSKLAKIVNSAISTWVHAMEG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07080			Thioredoxin superfamily protei...		Lus10042270 [exp]	0	1
AT1G70000	MYB		myb-like transcription factor ...		Lus10010733 [exp]	1.4	0.8943
AT1G17160			pfkB-like carbohydrate kinase ...		Lus10026199 [exp]	2.0	0.8925
AT5G54855			Pollen Ole e 1 allergen and ex...		Lus10001821 [exp]	3.5	0.8799
AT2G40830		RHC1A	RING-H2 finger C1A (.1.2.3)		Lus10003698 [exp]	3.9	0.8764
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10033754 [exp]	4.9	0.8818
AT3G12800		SDRB, DECR	short-chain dehydrogenase-redu...		Lus10031746 [exp]	6.5	0.8748
AT3G48890		MSBP2, ATMP2, A...	MEMBRANE STEROID BINDING PROTE...		Lus10027449 [exp]	6.9	0.8639
AT4G17440			Protein of unknown function (D...		Lus10004378 [exp]	7.7	0.8502
AT5G57900		SKIP1	SKP1 interacting partner 1 (.1...		Lus10034452 [exp]	9.2	0.8438
AT3G12800		SDRB, DECR	short-chain dehydrogenase-redu...		Lus10031170 [exp]	9.9	0.8520

Compare expression of checked genes

Lus10042270 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.