Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18390 142 / 4e-44 HAL, ARL2, TTN5, ATARLC1 TITAN 5, HALLIMASCH, ARF-LIKE 2, ADP-ribosylation factor family protein (.1) AT2G24765 78 / 3e-19 ARF3, ARL1, ATARL1 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) AT5G17060 79 / 5e-19 ATARFB1B ADP-ribosylation factor B1B (.1) AT2G15310 79 / 5e-19 ATARFB1A ADP-ribosylation factor B1A (.1) AT1G23490 78 / 9e-19 ATARFA1A, ATARF1, ATARF ADP-RIBOSYLATION FACTOR 1A, ADP-ribosylation factor 1 (.1) AT1G10630 78 / 9e-19 ATARFA1F ADP-ribosylation factor A1F (.1) AT1G70490 78 / 9e-19 ATARFA1D Ras-related small GTP-binding family protein (.1.2.3) AT3G62290 78 / 1e-18 ATARFA1E ADP-ribosylation factor A1E (.1.2.3) AT2G47170 77 / 1e-18 ARF1A1C, ARF1 Ras-related small GTP-binding family protein (.1) AT5G14670 77 / 1e-18 ATARFA1B ADP-ribosylation factor A1B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026383 [exp] 151 / 2e-47 AT2G18390 317 / 3e-112 TITAN 5, HALLIMASCH, ARF-LIKE 2, ADP-ribosylation factor family protein (.1) Lus10021092 [exp] 155 / 4e-45 AT3G58460 535 / 0.0 RHOMBOID-like protein 15 (.1.2) Lus10002817 [exp] 82 / 2e-20 AT2G15310 273 / 1e-94 ADP-ribosylation factor B1A (.1) Lus10027870 [exp] 81 / 1e-19 AT1G10630 241 / 2e-82 ADP-ribosylation factor A1F (.1) Lus10009571 [exp] 79 / 4e-19 AT5G17060 365 / 4e-131 ADP-ribosylation factor B1B (.1) Lus10031436 [exp] 78 / 1e-18 AT5G14670 368 / 2e-132 ADP-ribosylation factor A1B (.1) Lus10029144 [exp] 81 / 2e-18 AT5G14670 371 / 8e-129 ADP-ribosylation factor A1B (.1) Lus10020392 [exp] 77 / 2e-18 AT5G17060 363 / 3e-130 ADP-ribosylation factor B1B (.1) Lus10013021 [exp] 79 / 3e-18 AT5G14670 374 / 9e-133 ADP-ribosylation factor A1B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G024800 [exp] 145 / 4e-45 AT2G18390 326 / 1e-115 TITAN 5, HALLIMASCH, ARF-LIKE 2, ADP-ribosylation factor family protein (.1) Potri.001G301200 [exp] 82 / 2e-20 AT3G62290 284 / 4e-99 ADP-ribosylation factor A1E (.1.2.3) Potri.018G096077 [exp] 81 / 8e-20 AT2G24765 354 / 8e-127 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.006G267800 [exp] 79 / 2e-19 AT2G24765 333 / 8e-119 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.018G013700 [exp] 79 / 2e-19 AT2G24765 336 / 6e-120 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.006G171500 [exp] 79 / 2e-19 AT2G24765 353 / 8e-127 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.005G142100 [exp] 78 / 6e-19 AT1G10630 339 / 5e-121 ADP-ribosylation factor A1F (.1) Potri.009G096900 [exp] 78 / 9e-19 AT1G10630 273 / 5e-95 ADP-ribosylation factor A1F (.1) Potri.013G005500 [exp] 78 / 1e-18 AT5G14670 372 / 4e-134 ADP-ribosylation factor A1B (.1) Potri.013G005600 [exp] 77 / 1e-18 AT1G10630 374 / 7e-135 ADP-ribosylation factor A1F (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00025 [flax] [poplar] Arf ADP-ribosylation factor family
Representative CDS sequence Show only first row Show all	>Lus10042271 pacid=23153770 polypeptide=Lus10042271 locus=Lus10042271.g ID=Lus10042271.BGIv1.0 annot-version=v1.0 ATGGAGATTGGAATCGCTGACTGCAGTGGATCAAGAGAAAAGAGAAGGAAATGTGTATTCTCATGGTGTCCGTATTCCTCTCTCTCATTTCCCTCCTCTG CATTTACCTATCTAACGACCCTGAATCTGATCACTGACTGTCGTTTCCGCAGCGGCCTGGACAACTCCGGAAAGACGACGATCGTTCTCAAGATCAACGG AGAAGACACCACCGTCATCAGCCCAACCCTCGGCTTCAACATCAAAACCATCACTTACCACAAGTATATGCTGAACATATGGGACGTTGGTGGGCAAAGG ACGATAAGATTCTACTGGAGAAACTACTTGGAGCAGACAGATGGGCTGGTCTGGGTTGTGGACAGTTCACATCTCAGGAAGTTGCAAGGCGGAACTTGA
AA sequence Show only first row Show all	>Lus10042271 pacid=23153770 polypeptide=Lus10042271 locus=Lus10042271.g ID=Lus10042271.BGIv1.0 annot-version=v1.0 MEIGIADCSGSREKRRKCVFSWCPYSSLSFPSSAFTYLTTLNLITDCRFRSGLDNSGKTTIVLKINGEDTTVISPTLGFNIKTITYHKYMLNIWDVGGQR TIRFYWRNYLEQTDGLVWVVDSSHLRKLQGGT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18390		HAL, ARL2, TTN5...	TITAN 5, HALLIMASCH, ARF-LIKE ...		Lus10042271 [exp]	0	1
AT5G58030			Transport protein particle (TR...		Lus10036292 [exp]	1.0	0.8152
AT1G16040			unknown protein		Lus10032921 [exp]	3.3	0.7460
AT5G61310			Cytochrome c oxidase subunit V...		Lus10002429 [exp]	6.5	0.8036
AT3G18510			unknown protein		Lus10032475 [exp]	11.6	0.7927
AT1G02090		ATCSN7, COP15, ...	FUSCA 5, CONSTITUTIVE PHOTOMOR...		Lus10028205 [exp]	13.0	0.6832
AT2G39960			Microsomal signal peptidase 25...		Lus10014838 [exp]	14.8	0.7494
AT5G14240			Thioredoxin superfamily protei...		Lus10032064 [exp]	21.5	0.7510
AT1G76200			unknown protein		Lus10012279 [exp]	29.9	0.7552
AT2G39960			Microsomal signal peptidase 25...		Lus10009885 [exp]	31.2	0.6861
AT4G35980			unknown protein		Lus10041889 [exp]	33.0	0.7549

Compare expression of checked genes

Lus10042271 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.