Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03220 64 / 4e-11 Protein with RNI-like/FBD-like domains (.1) AT3G52680 61 / 5e-10 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT5G53840 59 / 3e-09 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G51370 56 / 2e-08 F-box/RNI-like/FBD-like domains-containing protein (.1.2.3) AT3G03360 56 / 3e-08 F-box/RNI-like superfamily protein (.1) AT5G44980 54 / 6e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G80960 52 / 3e-07 F-box and Leucine Rich Repeat domains containing protein (.1.2.3) AT1G78730 52 / 4e-07 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1) AT5G22660 51 / 5e-07 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) AT2G04230 51 / 6e-07 FBD, F-box and Leucine Rich Repeat domains containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028664 [exp] 125 / 4e-31 AT5G50260 59 / 6e-09 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Lus10017530 [exp] 122 / 6e-31 AT5G22660 55 / 8e-08 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Lus10008602 [exp] 99 / 2e-24 ND 77 / 3e-17 Lus10003943 [exp] 87 / 9e-19 AT3G59160 50 / 1e-06 F-box/RNI-like superfamily protein (.1) Lus10037440 [exp] 88 / 1e-18 AT1G69630 84 / 5e-17 F-box/RNI-like superfamily protein (.1) Lus10018543 [exp] 84 / 2e-17 AT1G03510 534 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029952 [exp] 76 / 3e-15 AT5G03100 68 / 1e-12 F-box/RNI-like superfamily protein (.1) Lus10037289 [exp] 76 / 9e-15 AT5G02920 61 / 4e-10 F-box/RNI-like superfamily protein (.1) Lus10003696 [exp] 72 / 3e-14 AT3G51530 52 / 1e-07 F-box/RNI-like/FBD-like domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G104300 [exp] 67 / 6e-12 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 62 / 2e-10 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104200 [exp] 57 / 6e-09 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.015G011200 [exp] 57 / 6e-09 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.001G322900 [exp] 55 / 5e-08 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.011G098700 [exp] 54 / 9e-08 AT1G80960 86 / 6e-18 F-box and Leucine Rich Repeat domains containing protein (.1.2.3) Potri.011G024600 [exp] 53 / 2e-07 AT4G26350 95 / 9e-21 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.017G146500 [exp] 52 / 3e-07 AT5G02920 64 / 2e-11 F-box/RNI-like superfamily protein (.1) Potri.001G337200 [exp] 50 / 8e-07 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.017G146400 [exp] 51 / 1e-06 AT3G28410 79 / 2e-15 F-box/RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10042272 pacid=23153615 polypeptide=Lus10042272 locus=Lus10042272.g ID=Lus10042272.BGIv1.0 annot-version=v1.0 ATGAAGCGAAATCGAGCACATCTGCTCCCCGGCGATGAACTAACAATGAAGCGAATTCGAGCTCATCTCCTCCCCGGTGACGAAAGCAAGGAATCTGACC GGTTATCGGAGTTACCCGATGAGATCATCCATGAGATTCTAGAACGGCTGTCTCCCGAGGAAACAGCGAAATCAACCATACTGTCGAGAAGATGGATCCA TATCTGGCGCTCGTTCCCAATCCTAGAGTTTCACTCTGGCGATGATTATTACTCACCGAAGCTACGTTCGTTTGTCGCCGCCGCCTCCAAAAAGATGGAC CGCATCAAAGCCGTCAGGATTTCTTCCGTACTGCGTGAATTCATGGGCGATGTGTTGGATTTGATTGTAAACAGCGAACCAGAAGAGATTGACATTAATG TTGATATAGCCCATTGGTATGATCAATTCCTGGATAGCCCATTAATTATTAACAACCCCAGGCTCAGAATCCTCAAACTATCCTGCTGCAACTTGTGGAA ATGCCCATTCACCAATCATCTTGATGTGATGATGATTAATCTCTGTGTGCTCCATCTTTACTGCTGCTGCAGTAGCGACGAACTTGTTCTGAATGCCTTG ATCGCAGGTGCTCCTCAGTTAGAGGACCTGAAACTGTGGGACTGTTGCACAATGAGGAGGCTAAATATCTGCAACAAACCCAACCTGAAGATTGTAGAGA TTAGAAATATGATTTTTCTAGAACTAGTTGAGATCACAGGGACAAAATCTCTCCAAGTACTATCGATTACAGGCTCATCTCTATACATGCCAGCTACTGG TGGTGGTGGTTTGGATATTTCTGCTTCAGCATTGTCAAGCATCAAATCACTAAAGATTGAAGATGCCAACTTTTTGACTGCGGACGTTGTTGATGGCCTA ATCTCTAAGTTGCCGTCTCCACAGTCGCTTTCTGTTTGGCTCTTTGGGGATGTATGCAAAGCCGATAATCGAGTTCGGCGCTCCTGGAAACTTTTGTTGG ATCTCCATTTTAGTCTCAGTTTTCATCTAGCGGAGATTAGCTTTTGTCCGAGATTGGTTGATTTCCATTATCACGGAGATACTGTTGATGTTCACCTTGA CAGAGACACGTAG
AA sequence Show only first row Show all	>Lus10042272 pacid=23153615 polypeptide=Lus10042272 locus=Lus10042272.g ID=Lus10042272.BGIv1.0 annot-version=v1.0 MKRNRAHLLPGDELTMKRIRAHLLPGDESKESDRLSELPDEIIHEILERLSPEETAKSTILSRRWIHIWRSFPILEFHSGDDYYSPKLRSFVAAASKKMD RIKAVRISSVLREFMGDVLDLIVNSEPEEIDINVDIAHWYDQFLDSPLIINNPRLRILKLSCCNLWKCPFTNHLDVMMINLCVLHLYCCCSSDELVLNAL IAGAPQLEDLKLWDCCTMRRLNICNKPNLKIVEIRNMIFLELVEITGTKSLQVLSITGSSLYMPATGGGGLDISASALSSIKSLKIEDANFLTADVVDGL ISKLPSPQSLSVWLFGDVCKADNRVRRSWKLLLDLHFSLSFHLAEISFCPRLVDFHYHGDTVDVHLDRDT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03220			Protein with RNI-like/FBD-like...		Lus10042272 [exp]	0	1
AT5G02100		UNE18, ORP3A	UNFERTILIZED EMBRYO SAC 18, OS...		Lus10024386 [exp]	22.3	0.8421
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Lus10020705 [exp]	33.5	0.7879
AT5G25110		CIPK25, SnRK3.2...	SNF1-RELATED PROTEIN KINASE 3....		Lus10024448 [exp]	50.1	0.7617
AT2G41150			unknown protein		Lus10022403 [exp]	71.4	0.7801
AT1G22450		ATCOX6B2, COX6B	CYTOCHROME C OXIDASE 6B2, cyto...		Lus10036478 [exp]	71.6	0.7783
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Lus10023851 [exp]	79.3	0.7846
AT3G49870		ATARLA1C	ADP-ribosylation factor-like A...		Lus10011545 [exp]	84.4	0.7459
AT1G54120			unknown protein		Lus10013152 [exp]	91.0	0.7846
					Lus10035642 [exp]	103.3	0.7828
AT5G14890			NHL domain-containing protein ...		Lus10033413 [exp]	132.6	0.7517

Compare expression of checked genes

Lus10042272 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.