Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30100 535 / 0 pentatricopeptide (PPR) repeat-containing protein (.1) AT3G16010 45 / 8e-05 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G14080 44 / 0.0004 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G20300 43 / 0.0004 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 43 / 0.0005 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026382 [exp] 914 / 0 AT2G30100 580 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10001378 [exp] 45 / 0.0001 AT1G10910 818 / 0.0 EMBRYO DEFECTIVE 3103, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G075200 [exp] 653 / 0 AT2G30100 554 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.006G242200 [exp] 50 / 3e-06 AT1G62930 472 / 4e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G069100 [exp] 49 / 7e-06 AT1G74850 1268 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Potri.006G242500 [exp] 47 / 2e-05 AT1G62930 473 / 1e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G139300 [exp] 47 / 4e-05 AT5G01110 275 / 1e-81 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G131400 [exp] 46 / 5e-05 AT1G09680 669 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G071600 [exp] 45 / 0.0001 AT5G40400 634 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G069600 [exp] 44 / 0.0003 AT4G28010 661 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042274 pacid=23153480 polypeptide=Lus10042274 locus=Lus10042274.g ID=Lus10042274.BGIv1.0 annot-version=v1.0 ATGGCTTCCACGGCTCACAATTCTGTAGCTTCAATCGCCAATTTCCGCTCATTTGACCAGAAGAACCGACTGCTTGTTGTTCAACCTTGTCAAATTTCCT GTATCAATCCACGCCCTAGAATTTCCACCATAATATGTAGCAACCAAAACCCTAATTTTTGTGCTGCGAAGCCTAGTGGTAAGCCGGGAATTCGAGAGTT CCGGCTGCACGGTTCGGTAGAATTGGATAGGTTCGTAACGAGTGACGACGGGGACGAAATGAGCGAAGGGTTTTTCGAGGCGATAGAGGAACTGGAGAGA ATGGCTAGAGAGCCGTCTGACATTCTGGAGGAAATGAACGACAGGCTCTCGGCTAGGGAGTTGCAGTTGGTGCTTGTGTACTTCTCCCAGGAAGGGAGGG ACTCGTGGTGTGCGCTCGAGGTGTTCGAGTGGCTGCGAAAGGAGAATCGAGTCGACGAGGAGACGATGGAGCTTATGGTGGCCATAATGTGTGGGTGGGT TAGGAAGTTGATTGAAGGGAACCATGATGTTGGGGATGTGGTGGACTTGCTTGTGGATATGGATTGTGTTGGGTTGAAGCCTAGTTTCAGTATGATGGAG AAGGTGATTTCTTTGTATTGGGAGATGGGGATGAAGGAGAGGGCTGTTTCCTTCGTGACCGAGGTTCTGAAGCGAGGGATCGCTTGTTCGGATGGCAATG GGAAAGGCCAAAAAGGCGGTCCGACCGGGTACCTTGCTTGGAAGATGATGGCTGATGGAAACTACAGAGAAGCAGTAAGAACGGTCATTAACCTAAAAGA ATCTGGATTAAAGCCAGAGGTTTACGCCTACCTCATTGCAATGACAGCAGTAGTCAAAGAGCTAAACGAATTTGCCAAAGCATTACGCAAATTGAAATCC TTTGCAAGGTCCGGCTCAGTAGCCGAACTCGACACAGAAAGCGTGGAACTTTCTGAGAGATACCAATCAGAGCTTCTCGAAGATGGGGTACGCCTATCTC AATGGGTGATCGAAGAAGCGGTGATTGAAGAAGCCGCAGATCATCCCTCCCTCTCCGGTATAGTCCACGAGCGGCTTCTAGCCATGTACATATGCGCAGG TCGAGGACTCGAAGCTGAGAGACAGTTATGGGAAATGAAACTCGTCGGTAAAGAGCCCGACGCGGACCTCTACGACATGGTCCTAGCCATCTGCGCATCG AAAAGGGAAGACGGTGCGATATCTCGATTGGTGTCGAGAGTTGAGGTTATGAGCTCTCAGCGTAAGAAGAAGTCTCTGTCGTGGCTGCTGAGGGGGTACG TCAAGGGAGGCTACTACGACGAGGCTGCAGAAGCTCTGACGAGGATGCTCGATCTGGGACTGTGTCCGGATTATATAGACCGGGTAGCGGTGGTGCAGGG ACTGCGGAAAAGGATCAAGAGATGGGAAGATGTGGAATCGTATCTGAAGCTGTCGAAGCGGCTTTCGGATGCGAGCTTGATCGGACCGGCACTTGTGTAT CTGTATATGAAGAAGTATAAGCTCTGGGTTTTAAAGATGCTTTAG
AA sequence Show only first row Show all	>Lus10042274 pacid=23153480 polypeptide=Lus10042274 locus=Lus10042274.g ID=Lus10042274.BGIv1.0 annot-version=v1.0 MASTAHNSVASIANFRSFDQKNRLLVVQPCQISCINPRPRISTIICSNQNPNFCAAKPSGKPGIREFRLHGSVELDRFVTSDDGDEMSEGFFEAIEELER MAREPSDILEEMNDRLSARELQLVLVYFSQEGRDSWCALEVFEWLRKENRVDEETMELMVAIMCGWVRKLIEGNHDVGDVVDLLVDMDCVGLKPSFSMME KVISLYWEMGMKERAVSFVTEVLKRGIACSDGNGKGQKGGPTGYLAWKMMADGNYREAVRTVINLKESGLKPEVYAYLIAMTAVVKELNEFAKALRKLKS FARSGSVAELDTESVELSERYQSELLEDGVRLSQWVIEEAVIEEAADHPSLSGIVHERLLAMYICAGRGLEAERQLWEMKLVGKEPDADLYDMVLAICAS KREDGAISRLVSRVEVMSSQRKKKSLSWLLRGYVKGGYYDEAAEALTRMLDLGLCPDYIDRVAVVQGLRKRIKRWEDVESYLKLSKRLSDASLIGPALVY LYMKKYKLWVLKML

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30100			pentatricopeptide (PPR) repeat...		Lus10042274 [exp]	0	1
AT5G57040			Lactoylglutathione lyase / gly...		Lus10021574 [exp]	1.0	0.9363
AT2G30100			pentatricopeptide (PPR) repeat...		Lus10026382 [exp]	2.2	0.9129
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Lus10002103 [exp]	2.8	0.9150
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Lus10024303 [exp]	3.5	0.9060
AT1G02630			Nucleoside transporter family ...		Lus10030104 [exp]	3.7	0.9044
AT5G57345			unknown protein		Lus10001438 [exp]	3.7	0.9354
AT5G57040			Lactoylglutathione lyase / gly...		Lus10021573 [exp]	5.1	0.8926
AT2G20920			Protein of unknown function (D...		Lus10024004 [exp]	5.5	0.8974
AT4G32260		PDE334	PIGMENT DEFECTIVE 334, ATPase,...		Lus10041039 [exp]	8.3	0.9305
AT5G54770		THI4, TZ, THI1	THIAZOLE REQUIRING, THIAMINE4,...		Lus10007646 [exp]	11.0	0.8929

Compare expression of checked genes

Lus10042274 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.