Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07160 361 / 1e-123 Protein phosphatase 2C family protein (.1) AT2G30020 340 / 6e-115 Protein phosphatase 2C family protein (.1) AT2G40180 317 / 5e-106 ATHPP2C5 phosphatase 2C5 (.1) AT1G67820 249 / 4e-79 Protein phosphatase 2C family protein (.1) AT4G08260 221 / 4e-71 Protein phosphatase 2C family protein (.1) AT3G27140 189 / 2e-58 Protein phosphatase 2C family protein (.1) AT4G31750 186 / 2e-56 WIN2 HOPW1-1-interacting 2 (.1) AT5G10740 187 / 3e-56 Protein phosphatase 2C family protein (.1) AT5G24940 189 / 8e-56 Protein phosphatase 2C family protein (.1) AT5G53140 179 / 2e-52 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026381 [exp] 610 / 0 AT1G07160 390 / 4e-135 Protein phosphatase 2C family protein (.1) Lus10041072 [exp] 224 / 1e-70 AT1G07160 238 / 3e-76 Protein phosphatase 2C family protein (.1) Lus10036871 [exp] 224 / 2e-69 AT1G67820 380 / 1e-129 Protein phosphatase 2C family protein (.1) Lus10006222 [exp] 212 / 2e-64 AT1G67820 382 / 6e-130 Protein phosphatase 2C family protein (.1) Lus10019012 [exp] 196 / 4e-59 AT5G53140 474 / 2e-167 Protein phosphatase 2C family protein (.1) Lus10026239 [exp] 184 / 5e-56 AT4G31750 454 / 3e-163 HOPW1-1-interacting 2 (.1) Lus10042430 [exp] 184 / 7e-56 AT4G31750 452 / 2e-162 HOPW1-1-interacting 2 (.1) Lus10014926 [exp] 183 / 5e-55 AT5G53140 448 / 3e-158 Protein phosphatase 2C family protein (.1) Lus10020104 [exp] 183 / 6e-55 AT4G31750 523 / 0.0 HOPW1-1-interacting 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G278500 [exp] 394 / 4e-136 AT2G30020 451 / 2e-158 Protein phosphatase 2C family protein (.1) Potri.009G073000 [exp] 384 / 4e-132 AT2G30020 466 / 9e-164 Protein phosphatase 2C family protein (.1) Potri.010G187000 [exp] 340 / 3e-115 AT2G30020 381 / 6e-131 Protein phosphatase 2C family protein (.1) Potri.008G070400 [exp] 338 / 1e-114 AT2G40180 365 / 1e-124 phosphatase 2C5 (.1) Potri.013G099400 [exp] 273 / 2e-88 AT1G07160 272 / 1e-87 Protein phosphatase 2C family protein (.1) Potri.019G071600 [exp] 265 / 6e-85 AT1G07160 268 / 8e-86 Protein phosphatase 2C family protein (.1) Potri.010G047600 [exp] 242 / 2e-76 AT1G67820 399 / 2e-136 Protein phosphatase 2C family protein (.1) Potri.006G267600 [exp] 194 / 2e-59 AT4G31750 535 / 0.0 HOPW1-1-interacting 2 (.1) Potri.018G013900 [exp] 190 / 6e-58 AT4G31750 533 / 0.0 HOPW1-1-interacting 2 (.1) Potri.015G019200 [exp] 184 / 9e-55 AT5G53140 492 / 5e-175 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10042275 pacid=23153574 polypeptide=Lus10042275 locus=Lus10042275.g ID=Lus10042275.BGIv1.0 annot-version=v1.0 ATGTCCGTTGCGGTGGCCAGCTCCCCGGTCTTCTCACCTTCTTCCTCCCTCTTCCTCCTCAACAAGTCCTCCGTCGGCGGCGTCACATCCATCGCTATCC CTAAATCTCCGACGACGAGCCACTTCAATTCCCCTTCCTCTCCTCTCCGATTCAGCACCCTCCAGAGGACTTCTCCGCCGTCTTCAACGGCGATCGCTTC TTCTTCTACCGATGGATCGGTGTCGAGGAGGAAACGGCCGCCCAAGCTCGTTATTCCCGTCCCAGCGATGGGATTCGGAGGAAGCGAGGAAGCTGCAGCT GCTGCTGATGTGGATGAAGTTGGGAAACAAAGGGATGGATACGCGGTTTTCAGCAAGAGAGGGAAGAGGAAGAGGAAATCCATGGAGGATCGGTTCTCCG CCGCTGTTGAAATCCAAGGAGATCCCAAACAGGCTTTCTTCGGAGTTTTCGACGGGCACGGCGGGGCGGAAGCGGCGAAATATGCGGCGAATAATTTGGG GAGGAACATTCTGAAGCGGATCTCGAGCGGCGGAGGAGGAGAAGAGAAAATGGAGGATGCAATTAAGCTAGGCTACCTAGACACGGATTCGCAGTTTCTA CAAGAAGAAACTAGAGGCGGAACTTGCTGCGTGACAGCATTGATCCGCGAAGGAAACTTGATTGTCTCCAACGCCGGGGATTGCCGCGCCGTTGTCAGCA GAGGCGGCATCGCCGAGGCACTCACTTCCGACCACCGGCCTGGGAGGGAAGACGAACGGCTCAGGATTGAATCCACGGGAGGATACGTAGATATGGTCAG CGGGACGTGGCGTATCCAAGGAACGCTTGCGGTATCGAGAGGAATCGGAGATAGGCGTCTGAAGCAATGGGTGATTCCAGAACCCGAGACACGAATGCTA AATGTCCAGCCGAACGACGAGTTTTTGATACTGGCTTCCGACGGGTTGTGGGACAAGGTGAGCAATCAAGAAGCAGTGAATATAGCAGCGGCAGATTTGA AGCAACTGCAGCCGCTGCTTGCGTGCAAGAAGCTTGTCGAGCTCTCGATTTCGAAAGGATCTAACGACGACATTACTGTGATGATCATTCAGCTAGGGCG ATACGTCTGA
AA sequence Show only first row Show all	>Lus10042275 pacid=23153574 polypeptide=Lus10042275 locus=Lus10042275.g ID=Lus10042275.BGIv1.0 annot-version=v1.0 MSVAVASSPVFSPSSSLFLLNKSSVGGVTSIAIPKSPTTSHFNSPSSPLRFSTLQRTSPPSSTAIASSSTDGSVSRRKRPPKLVIPVPAMGFGGSEEAAA AADVDEVGKQRDGYAVFSKRGKRKRKSMEDRFSAAVEIQGDPKQAFFGVFDGHGGAEAAKYAANNLGRNILKRISSGGGGEEKMEDAIKLGYLDTDSQFL QEETRGGTCCVTALIREGNLIVSNAGDCRAVVSRGGIAEALTSDHRPGREDERLRIESTGGYVDMVSGTWRIQGTLAVSRGIGDRRLKQWVIPEPETRML NVQPNDEFLILASDGLWDKVSNQEAVNIAAADLKQLQPLLACKKLVELSISKGSNDDITVMIIQLGRYV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07160			Protein phosphatase 2C family ...		Lus10042275 [exp]	0	1
AT4G29780			unknown protein		Lus10027622 [exp]	1.0	0.9679
AT3G03280			unknown protein		Lus10013490 [exp]	1.4	0.9638
AT4G34320			Protein of unknown function (D...		Lus10011295 [exp]	4.6	0.9552
AT4G29780			unknown protein		Lus10011946 [exp]	5.3	0.9552
AT3G20310	AP2_ERF	ATERF7, ATERF-7	ethylene response factor 7 (.1...		Lus10043182 [exp]	5.7	0.9443
AT1G19210	AP2_ERF		Integrase-type DNA-binding sup...		Lus10034885 [exp]	5.9	0.9480
AT5G04340	C2H2ZnF	ZAT6, CZF2, C2H...	COLD INDUCED ZINC FINGER PROTE...		Lus10004316 [exp]	6.0	0.9426
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Lus10034180 [exp]	7.3	0.9524
AT1G06450			Polynucleotidyl transferase, r...		Lus10035078 [exp]	7.4	0.9544
AT3G57450			unknown protein		Lus10031071 [exp]	8.7	0.9201

Compare expression of checked genes

Lus10042275 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.