Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15975 81 / 5e-18 RING/U-box superfamily protein (.1) AT5G58580 82 / 6e-18 ATL63 TOXICOS EN LEVADURA 63 (.1) AT3G16720 81 / 1e-17 ATL2 TOXICOS EN LEVADURA 2 (.1) AT1G53820 74 / 3e-15 RING/U-box superfamily protein (.1) AT1G76410 71 / 5e-15 ATL8 RING/U-box superfamily protein (.1) AT5G05280 71 / 6e-15 RING/U-box superfamily protein (.1) AT1G20823 71 / 9e-15 RING/U-box superfamily protein (.1) AT4G09110 72 / 1e-14 RING/U-box superfamily protein (.1) AT2G17450 70 / 2e-14 RHA3A RING-H2 finger A3A (.1) AT3G10910 69 / 2e-14 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026380 [exp] 129 / 5e-34 AT1G07110 1069 / 0.0 "fructose-2,6-bisphosphatase", fructose-2,6-bisphosphatase (.1) Lus10037490 [exp] 79 / 8e-17 AT3G16720 224 / 2e-70 TOXICOS EN LEVADURA 2 (.1) Lus10006493 [exp] 77 / 2e-16 AT3G16720 221 / 5e-71 TOXICOS EN LEVADURA 2 (.1) Lus10009511 [exp] 77 / 4e-16 AT2G20030 228 / 3e-71 RING/U-box superfamily protein (.1) Lus10011702 [exp] 77 / 4e-16 AT4G28890 231 / 1e-71 RING/U-box superfamily protein (.1) Lus10016163 [exp] 75 / 4e-16 AT2G27940 133 / 1e-38 RING/U-box superfamily protein (.1) Lus10029037 [exp] 74 / 4e-16 AT3G10910 166 / 9e-53 RING/U-box superfamily protein (.1) Lus10034953 [exp] 75 / 3e-15 AT2G20030 278 / 2e-90 RING/U-box superfamily protein (.1) Lus10002194 [exp] 73 / 4e-15 AT2G42360 153 / 4e-46 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G073900 [exp] 104 / 8e-27 AT5G58580 102 / 9e-26 TOXICOS EN LEVADURA 63 (.1) Potri.001G279200 [exp] 99 / 1e-24 AT5G58580 101 / 4e-25 TOXICOS EN LEVADURA 63 (.1) Potri.010G010500 [exp] 82 / 4e-18 AT3G16720 202 / 1e-63 TOXICOS EN LEVADURA 2 (.1) Potri.019G091400 [exp] 79 / 3e-17 AT2G42360 143 / 9e-42 RING/U-box superfamily protein (.1) Potri.008G219200 [exp] 79 / 5e-17 AT3G16720 197 / 2e-61 TOXICOS EN LEVADURA 2 (.1) Potri.013G091300 [exp] 76 / 2e-16 AT3G10910 153 / 2e-47 RING/U-box superfamily protein (.1) Potri.011G063100 [exp] 75 / 5e-16 AT2G42350 106 / 3e-28 RING/U-box superfamily protein (.1) Potri.019G057700 [exp] 72 / 3e-15 AT3G10910 157 / 6e-49 RING/U-box superfamily protein (.1) Potri.019G130100 [exp] 72 / 3e-15 AT5G05280 129 / 5e-38 RING/U-box superfamily protein (.1) Potri.016G136200 [exp] 71 / 7e-15 AT3G10910 144 / 8e-44 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10042277 pacid=23153618 polypeptide=Lus10042277 locus=Lus10042277.g ID=Lus10042277.BGIv1.0 annot-version=v1.0 ATGAGAGATCTCTTAAACAGCATATCCTCCTCTTCTTCATACGACAGCAGCAGCAACCTCCTGCTTGCTGCATTCATCTCCCTCCTATTGGTAATCCTCT TCGTCCTCCTCCTCCACATCTACGCCAAATGGTACCTCTCCCGCCGCATGAGGACCACCACCGTCATCACCTCCTCCCTCACCCTCCAGCCTTCTTCTTC CTCCTCCTCGTCGGTGATCAACTACCGCTACCATTTCCGGACCCATTCCGACTCCGAACAGCAACAGGCTGACCAGACCAGTGCTGCTGGCCTCCATCCT TCTGTCATTGCATCGATCCCGCTCTTCGTTTACATCAACAGCCGTCGTCCTAGCAATGGCGGCAGTGAAATTAGTTGGCTTCCCGACGGCGAGGAGAGCA ACAAGAAGATGGGTGTTGTGTGTGTGATTTGCTTGAGTGGGTTTGGGGATGGTGAAGTTGGGAGGTGCCTGAGTGGTTGTGGACATGGGTTTCACGTTGA GTGTATAGATATGTGGCTGCTTTCACACTCCAGCTGTCCCATCTGTAGATCCCCTGCCGCTCCCCTGCCTCTTCCTCTGCCTCCCGCCGTCCCAGCAGAT AGTAAGGCTGCCGATGGTGAGGAAGAGGAGGAGGCGGAGGAGGAGGAGGTTGCGGTGTTGATTAGTAGTGCTAGTGGACGGTCCTCGTCGGAGGCTGATG ATCATCATCATCATCATCATGACAATGTACAATGTGTCTCTCAGTGA
AA sequence Show only first row Show all	>Lus10042277 pacid=23153618 polypeptide=Lus10042277 locus=Lus10042277.g ID=Lus10042277.BGIv1.0 annot-version=v1.0 MRDLLNSISSSSSYDSSSNLLLAAFISLLLVILFVLLLHIYAKWYLSRRMRTTTVITSSLTLQPSSSSSSSVINYRYHFRTHSDSEQQQADQTSAAGLHP SVIASIPLFVYINSRRPSNGGSEISWLPDGEESNKKMGVVCVICLSGFGDGEVGRCLSGCGHGFHVECIDMWLLSHSSCPICRSPAAPLPLPLPPAVPAD SKAADGEEEEEAEEEEVAVLISSASGRSSSEADDHHHHHHDNVQCVSQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16720		ATL2	TOXICOS EN LEVADURA 2 (.1)		Lus10042277 [exp]	0	1
AT5G05340			Peroxidase superfamily protein...		Lus10006534 [exp]	3.6	0.8162
					Lus10039776 [exp]	10.5	0.7694
AT3G07200			RING/U-box superfamily protein...		Lus10018271 [exp]	19.6	0.6774
AT5G16770	MYB	ATMYB9	myb domain protein 9 (.1.2)		Lus10011031 [exp]	20.5	0.7624
AT5G18560	AP2_ERF	PUCHI	Integrase-type DNA-binding sup...		Lus10033963 [exp]	39.2	0.7147
AT1G14190			Glucose-methanol-choline (GMC)...		Lus10012816 [exp]	40.6	0.6687
AT1G22990		HIPP22	heavy metal associated isopren...		Lus10036004 [exp]	56.4	0.7370
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Lus10012478 [exp]	58.4	0.7377
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10006908 [exp]	65.7	0.7109
AT5G25530			DNAJ heat shock family protein...		Lus10021961 [exp]	94.2	0.6624

Compare expression of checked genes

Lus10042277 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.