Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07110 1120 / 0 FKFBP, ATF2KP, F2KP "fructose-2,6-bisphosphatase", fructose-2,6-bisphosphatase (.1) AT3G30200 103 / 5e-23 Plant transposase (Ptta/En/Spm family) (.1) AT5G04120 53 / 2e-07 Phosphoglycerate mutase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026380 [exp] 1428 / 0 AT1G07110 1069 / 0.0 "fructose-2,6-bisphosphatase", fructose-2,6-bisphosphatase (.1) Lus10031299 [exp] 1234 / 0 AT1G07110 1128 / 0.0 "fructose-2,6-bisphosphatase", fructose-2,6-bisphosphatase (.1) Lus10031298 [exp] 1231 / 0 AT1G07110 1129 / 0.0 "fructose-2,6-bisphosphatase", fructose-2,6-bisphosphatase (.1) Lus10031869 [exp] 1201 / 0 AT1G07110 1097 / 0.0 "fructose-2,6-bisphosphatase", fructose-2,6-bisphosphatase (.1) Lus10014360 [exp] 47 / 4e-05 AT3G50520 313 / 5e-108 Phosphoglycerate mutase family protein (.1) Lus10026068 [exp] 46 / 7e-05 AT3G50520 312 / 1e-107 Phosphoglycerate mutase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G073800 [exp] 1239 / 0 AT1G07110 1170 / 0.0 "fructose-2,6-bisphosphatase", fructose-2,6-bisphosphatase (.1) Potri.001G279100 [exp] 1235 / 0 AT1G07110 1161 / 0.0 "fructose-2,6-bisphosphatase", fructose-2,6-bisphosphatase (.1) Potri.007G040700 [exp] 44 / 0.0002 AT3G50520 327 / 2e-113 Phosphoglycerate mutase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF01591 [flax] [poplar] 6PF2K 6-phosphofructo-2-kinase CL0071 [flax] [poplar] His_phosphatase PF00300 [flax] [poplar] His_Phos_1 Histidine phosphatase superfamily (branch 1) CL0369 [flax] [poplar] GHD PF00686 [flax] [poplar] CBM_20 Starch binding domain
Representative CDS sequence Show only first row Show all	>Lus10042278 pacid=23153538 polypeptide=Lus10042278 locus=Lus10042278.g ID=Lus10042278.BGIv1.0 annot-version=v1.0 ATGGGGACGGGAACGTCCAAGGATGCCCCGGACGGCGTCTCACACGACGACGCCCGTGACGGATGTCTCGACTTCCTCGCCGGTAGCCAGCTGTTTGTCT CTCTCAAAATGGAGAATTTCAATCCTAATGGCGAGATTATCCCTCATGTCTACGGCTCTGCTCGTATTATCGGCTCTTGGGATCCTTCTAAAGCCCTATC CATGGAGCGGGAATCGGCTTCAATGTGGGAGCTCAGCTTCGTTGTTCCTCCTAATCACGAAACTCTGGATTTCAAGTTCATTCTGAAACCGAAGTACGGC TCAGCTCCTTGTGTGATCGAGGAGGGTCCAAACCGGCTTCTCTCAAGGGGTGCATTGCAAGGAGAATCAAGGCTGGCGATCTTTAGGAATGGTGATGATA TTTTGGAATATAGAGTTTTGATAAAGGTCGATCAAATTTCTCCCTTTGATCTTGCGGCTAGTTGGAGGGCATACCGGGAGAACTTTCGACCTTCGACTGT TCGTGGGATTCCTGATGTTACCATCAATTCTGAACCAAGTGAAGGAGCTGAGAATGGATCTCCTGCTAGTTTGGAGCTTGATCTTGAACGCTATGTAGTT CCAGCTCCATCAACCTCTGCAAACTCAGGGTCAGTTTATGCAGCTAACAATGCAGAGAATCCAAGGTTCAGAACTACTGATGTGTCGTGGTATAATTCTC AACCGAACAAGGGTGCTGCGGTTTCCTCTGATCTGAGTACAGCTTTTAAGGGCATTGAGGTTGTCATCCCAGATCCTCCCAAAGTGCATCCTGGTACTGA AATGCTGGATTCAAAGTCACTGGTTACTGTTTCACCCCTGCAAAAGCAAGATAGCCAGAGAGGTGTATTTGTGGACCGGGGTGTTGGATCTCCTAGACTG GTTAAATCACCAAGTGCGAGAAAATATACATTTGATCTTAAACAGGATGCAGAAACCAAGCACTCAATGCCAGCAGCTGCCGGGGCTGTTTTCGCCGCTG CTGTGGCAGACCAGATGCTTGGTCCAAAGGAAGACAGACATTTAGCAATTGTTCTGGTTGGTCTTCCAGCTCGGGGAAAAACTTTCACTGCAGCTAAACT TACTCGTTATCTTCGGTGGTTGGGTCATGATACCAAACATTTCAATGTTGGCAAGTACCGACGTCTTAAGCATGGAGTTAATCAGTGTGCTGACTTTTTC CGAGGAGACAACTCTGAAGGTGTAGAAGCACGTAATGAGGTAGCAGCTCTTGCAATGGAAGACATGATTGCCTGGATGCAAGAGGGTGGGCAGGTAGGAA TATTTGATGCCACAAATAGCACCAGGCAAAGAAGGAACATGCTGATGAAAATGGCTGAAGGGAAATGCAAGATTATATTCTTGGAAACTTTATGCAATGA TAGACGCATTATTGAGAGGAACATACGACTTAAAATCCAGCAAAGTCCAGACTATGCAGAACAGCCGGATTTTGAAGCTGGATATGAAGACTTCAAAAGT CGGCTGGAAAATTATGAAAAGGTCTACGAGCCGGTTGAAGAAGGTTCATACATTAAGATGATAGACATGGTCACTGGTAAAGGTGGGCAAATTCAGGTTA ACAATATAAGTGGCTACCTTCCCGGGCGCATTGTTTTCTTCCTGGTGAATACACATCTTACTCCCCGCCCAATTTTACTTACGAGGCACGGAGAAAGTCA GGACAATTTAAGAGGCCGAATCGGAGGTGATTCTTTATTGAGTGATTCTGGAGAAATATATGCCAAGAAGCTTTCCAACTTTGTCGAGAAACGTCTAAAA TCTGAGAAAGCAGCTTCTATTTGGACTAGCACATTGCAGAGGACGATCCTCACAGCTGGTCCACTTGCTGAATTTCCTAAGGTCCAATGGCGTGCCCTGG ATGAGATCAATGCTGGAGTGTGTGATGGAATGACATACGAGGAAATAAAGAAGAACATGCCGGAGGAGTACGAGTCCCGTAAGAAGGATAAGCTAAGATA CCGGTATCCTCGTGGAGAATCGTATCTGGACGTCATCCAGAGGCTGGAGCCAGTAATCATTGAACTGGAGAGACAAAGAGCACCAGTTGTAGTTATCTCC CACCAGGCAGTCTTGAGGGCTTTGTATGCTTATTTTGCTGATAGACCCCTGAAAGAAATTCCACACATAGAGATGCCGCTCCATACGATCATCGAGATAC AAATGGGAGTGACTGGTGTACAAGAGAAAAGATACAAACTCATGGACTAA
AA sequence Show only first row Show all	>Lus10042278 pacid=23153538 polypeptide=Lus10042278 locus=Lus10042278.g ID=Lus10042278.BGIv1.0 annot-version=v1.0 MGTGTSKDAPDGVSHDDARDGCLDFLAGSQLFVSLKMENFNPNGEIIPHVYGSARIIGSWDPSKALSMERESASMWELSFVVPPNHETLDFKFILKPKYG SAPCVIEEGPNRLLSRGALQGESRLAIFRNGDDILEYRVLIKVDQISPFDLAASWRAYRENFRPSTVRGIPDVTINSEPSEGAENGSPASLELDLERYVV PAPSTSANSGSVYAANNAENPRFRTTDVSWYNSQPNKGAAVSSDLSTAFKGIEVVIPDPPKVHPGTEMLDSKSLVTVSPLQKQDSQRGVFVDRGVGSPRL VKSPSARKYTFDLKQDAETKHSMPAAAGAVFAAAVADQMLGPKEDRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQCADFF RGDNSEGVEARNEVAALAMEDMIAWMQEGGQVGIFDATNSTRQRRNMLMKMAEGKCKIIFLETLCNDRRIIERNIRLKIQQSPDYAEQPDFEAGYEDFKS RLENYEKVYEPVEEGSYIKMIDMVTGKGGQIQVNNISGYLPGRIVFFLVNTHLTPRPILLTRHGESQDNLRGRIGGDSLLSDSGEIYAKKLSNFVEKRLK SEKAASIWTSTLQRTILTAGPLAEFPKVQWRALDEINAGVCDGMTYEEIKKNMPEEYESRKKDKLRYRYPRGESYLDVIQRLEPVIIELERQRAPVVVIS HQAVLRALYAYFADRPLKEIPHIEMPLHTIIEIQMGVTGVQEKRYKLMD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07110		FKFBP, ATF2KP, ...	"fructose-2,6-bisphosphatase",...		Lus10042278 [exp]	0	1
AT3G54440			glycoside hydrolase family 2 p...		Lus10024155 [exp]	4.5	0.9133
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10027230 [exp]	8.9	0.8863
AT5G63460			SAP domain-containing protein ...		Lus10016762 [exp]	10.0	0.8966
AT3G63210		MARD1	MEDIATOR OF ABA-REGULATED DORM...		Lus10022060 [exp]	11.0	0.8938
AT5G13760			Plasma-membrane choline transp...		Lus10039585 [exp]	11.8	0.9095
AT3G04600			Nucleotidylyl transferase supe...		Lus10018331 [exp]	22.1	0.8998
AT2G35450			catalytics;hydrolases (.1)		Lus10015759 [exp]	25.5	0.9044
AT5G14590			Isocitrate/isopropylmalate deh...		Lus10013090 [exp]	26.3	0.8882
AT2G44140			Peptidase family C54 protein (...		Lus10027079 [exp]	27.7	0.9050
AT4G23895			Pleckstrin homology (PH) domai...		Lus10023081 [exp]	29.0	0.8885

Compare expression of checked genes

Lus10042278 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.