Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026379 [exp] 87 / 6e-22 AT3G17930 170 / 1e-52 unknown protein
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042279 pacid=23154009 polypeptide=Lus10042279 locus=Lus10042279.g ID=Lus10042279.BGIv1.0 annot-version=v1.0 ATGGCTGCTCCCCTCCCAAAGTTTCCAACTTCATGTATTTCACGCCAAGCCAGAGCCATTCCTTCTCTGGGTACTTCAGCTTCGCCATGCTCTCAACTGG GCTCAACAGTCTGCAGCGTTTTCACAACAGGAAGATCGGTTGCACATGATAGACAGGAAGCTAGACTCTCTTTGAGGAGGCAAAGGTCAACCTTCTTGGT TTCTGCTTCTGAGAGTGGTTCCTCCTCCAGTGACGGGGATGGTAACTTAGATAAAGGCAAGGCATGTATATTGGGGAAAGCTCGGTTGCTTGATTCTGAC TGA
AA sequence Show only first row Show all	>Lus10042279 pacid=23154009 polypeptide=Lus10042279 locus=Lus10042279.g ID=Lus10042279.BGIv1.0 annot-version=v1.0 MAAPLPKFPTSCISRQARAIPSLGTSASPCSQLGSTVCSVFTTGRSVAHDRQEARLSLRRQRSTFLVSASESGSSSSDGDGNLDKGKACILGKARLLDSD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10042279 [exp]	0	1
AT3G17930			unknown protein		Lus10042280 [exp]	1.0	0.9387
AT5G20220			zinc knuckle (CCHC-type) famil...		Lus10036722 [exp]	2.0	0.9112
AT1G74410			RING/U-box superfamily protein...		Lus10021628 [exp]	3.0	0.9053
AT3G13320		ATCAX2, CAX2	cation exchanger 2 (.1)		Lus10006068 [exp]	3.2	0.8914
AT5G38510			Rhomboid-related intramembrane...		Lus10023145 [exp]	4.0	0.9030
AT5G02180			Transmembrane amino acid trans...		Lus10024374 [exp]	5.9	0.8878
					Lus10033476 [exp]	7.9	0.8847
AT1G54730			Major facilitator superfamily ...		Lus10029964 [exp]	9.4	0.8855
AT4G21190		EMB1417	embryo defective 1417, Pentatr...		Lus10039292 [exp]	10.0	0.8650
AT4G14210		PDE226, PDS3	PIGMENT DEFECTIVE 226, phytoen...		Lus10025080 [exp]	10.1	0.8720

Compare expression of checked genes

Lus10042279 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.