Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47340 1036 / 0 AT-ASN1, DIN6, ASN1 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3) AT5G10240 942 / 0 ASN3 asparagine synthetase 3 (.1.2) AT5G65010 938 / 0 ASN2 asparagine synthetase 2 (.1.2) AT4G27450 52 / 4e-07 Aluminium induced protein with YGL and LRDR motifs (.1) AT3G15450 49 / 4e-06 Aluminium induced protein with YGL and LRDR motifs (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031870 [exp] 1009 / 0 AT3G47340 1001 / 0.0 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3) Lus10024052 [exp] 899 / 0 AT5G10240 1013 / 0.0 asparagine synthetase 3 (.1.2) Lus10041698 [exp] 858 / 0 AT5G10240 976 / 0.0 asparagine synthetase 3 (.1.2) Lus10026376 [exp] 190 / 5e-57 AT3G47340 138 / 3e-38 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3) Lus10031300 [exp] 147 / 2e-40 AT5G65010 144 / 2e-40 asparagine synthetase 2 (.1.2) Lus10026379 [exp] 120 / 3e-30 AT3G17930 170 / 1e-52 unknown protein Lus10033418 [exp] 52 / 4e-07 AT4G27450 369 / 2e-130 Aluminium induced protein with YGL and LRDR motifs (.1) Lus10034883 [exp] 52 / 5e-07 AT4G27450 365 / 6e-129 Aluminium induced protein with YGL and LRDR motifs (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G072900 [exp] 1067 / 0 AT3G47340 1027 / 0.0 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3) Potri.001G278400 [exp] 1056 / 0 AT3G47340 1018 / 0.0 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3) Potri.005G075700 [exp] 959 / 0 AT5G10240 1039 / 0.0 asparagine synthetase 3 (.1.2) Potri.001G403000 [exp] 52 / 5e-07 AT4G27450 436 / 3e-157 Aluminium induced protein with YGL and LRDR motifs (.1) Potri.011G122100 [exp] 50 / 2e-06 AT4G27450 428 / 7e-154 Aluminium induced protein with YGL and LRDR motifs (.1) Potri.011G049900 [exp] 43 / 0.0004 AT4G27450 383 / 6e-136 Aluminium induced protein with YGL and LRDR motifs (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00733 [flax] [poplar] Asn_synthase Asparagine synthase
Representative CDS sequence Show only first row Show all	>Lus10042281 pacid=23153475 polypeptide=Lus10042281 locus=Lus10042281.g ID=Lus10042281.BGIv1.0 annot-version=v1.0 ATGTGTGGGATACTAGCTGTTCTGGGTTGCGCTGATGATTCTCAGACTAAAAGGGTCCGAGTGCTCGAGCTCTCTCGTAGGCTGAAGCACCGTGGGCCGG ACTGGAGTGGACTGTACCAGCACGGAGACTGTTACTTGGCCCATCAACGCCTGGCAATCATCGACCCGGCATCCGGCGACCAGCCTCTCTACAACGAGGA CAAGGCCATCGTCGTCACCGTCAACGGCGAAATCTACAACCATGAGGAGCTCCGTAAGCGCTTGCCCAACCACAACTTCCGTACCGGAAGCGACTGTGAT GTCATCGCTCACCTGTATGAGGAATATGGAGAGGAGTTCGTCGACTTGCTGGACGGGATGTTCTCGTTTGTGCTGCTTGACACTCGTGACAACAGCTTCA TCGTTGCTCGTGATGCCACCGGCATCACCTCTCTCTACATCGGCTGGGGACTCGACGGATCGATTTGGATTTCTTCCGAGCTGAAAGGTCTGAACGACGA CTGCGAGCATTTTGAGTGCTTCCCGCCTGGCCATCTCTACTCGAGCAAATCGGGTGGATTGAAGCGCTGGTACAATCCGCCATGGTTCTCTGAGTCTATC CCTTCCGCGCCATACGATCCACTTGCTCTCAGACGAGCATTTGAGAATGCTGTGACCAAGAGATTGATGACTGATGTCCCTTTTGGTGTTCTGCTCTCCG GTGGGCTAGATTCCTCCTTGGTTGCTTCCATCACGGCTAGGCACTTAGCTGGAACTAGAGCTGCAAAGCAATGGGGTTCCCAGCTTCATTCCTTCTGTGT TGGCCTTGAGGGCTCCCCTGACTTGAAAGCTGCAAAAGAGGTTGCGGACTACCTGGGGACCGTCCACCACGAGTTCAACTTCACGGTCCAGGATGGGATC GATGCGATCGAGGATGTGATTTACCACATCGAGACGTATGATGTTACCACCATCAGAGCGAGCACGCCCATGTTCTTGATGTCCCGGAAGATCAAGTCCT TGGGTGTGAAGATGGTTCTCTCTGGAGAAGGCTCTGATGAGGTGTTTGGTGGGTATCTCTACTTCCACAAGGCACCTAACAAGGAAGAGTTCCATCGTGA GACGTGTCGTAAGATCAAAGCTTTACATCAGTATGATTGCTTGAGAGCCAACAAGGCTACTTCTGCTTGGGGGTTGGAAGCTCGAGTTCCCTTCTTGGAC AAGGAGTTCATCAACGTTGCAATGGCTATTGACCCTCAGTGGAAGATGATTAAGCCCGAAGAAGGTAGGATAGAGAAATGGGTTCTTAGGAAAGCATTTG ATGACGAAGAACAACCGTATCTACCTAAGCATATTTTGTACAGACAGAAAGAGCAATTTAGTGATGGTGTTGGCTACAGCTGGATTGATGGCCTCAAAGC TCATGCTTCTCGACATGTAACCGATAAAATGATGCGAAATGCCGTACATATCTTCCCTCACAACACCCCAAACACCAAAGAAGCATATTACTACAGAATG ATCTTTGAGAGGTTTTTCCCACAGAACTCGGCCAGTCTGACTGTTCCTGGAGGAGCAAGCGTGGCTTGCAGCACAGCCAAAGCAGTCGAGTGGGATGCTT CATGGTCAGGAAATATGGACCCTTCTGGTAGAGCTGCATTGGGAGTTCATCTCTCGGCTTATACTGCAGCCGTGAGTTCTGGAATGGTGCCTCAGCCGAA GAGGATCAACAGCATGCCGCGAATGATGGAAGCTAGCAGTGCCAAGGAACTTGCTATCCAGAGCTAA
AA sequence Show only first row Show all	>Lus10042281 pacid=23153475 polypeptide=Lus10042281 locus=Lus10042281.g ID=Lus10042281.BGIv1.0 annot-version=v1.0 MCGILAVLGCADDSQTKRVRVLELSRRLKHRGPDWSGLYQHGDCYLAHQRLAIIDPASGDQPLYNEDKAIVVTVNGEIYNHEELRKRLPNHNFRTGSDCD VIAHLYEEYGEEFVDLLDGMFSFVLLDTRDNSFIVARDATGITSLYIGWGLDGSIWISSELKGLNDDCEHFECFPPGHLYSSKSGGLKRWYNPPWFSESI PSAPYDPLALRRAFENAVTKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTRAAKQWGSQLHSFCVGLEGSPDLKAAKEVADYLGTVHHEFNFTVQDGI DAIEDVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVLSGEGSDEVFGGYLYFHKAPNKEEFHRETCRKIKALHQYDCLRANKATSAWGLEARVPFLD KEFINVAMAIDPQWKMIKPEEGRIEKWVLRKAFDDEEQPYLPKHILYRQKEQFSDGVGYSWIDGLKAHASRHVTDKMMRNAVHIFPHNTPNTKEAYYYRM IFERFFPQNSASLTVPGGASVACSTAKAVEWDASWSGNMDPSGRAALGVHLSAYTAAVSSGMVPQPKRINSMPRMMEASSAKELAIQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47340		AT-ASN1, DIN6, ...	DARK INDUCIBLE 6, ARABIDOPSIS ...		Lus10042281 [exp]	0	1
AT1G69850		NTL1, ATNRT1:2	nitrate transporter 1:2 (.1)		Lus10030799 [exp]	1.7	0.8917
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10021422 [exp]	3.3	0.8948
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10039830 [exp]	15.5	0.8945
AT5G47950			HXXXD-type acyl-transferase fa...		Lus10034019 [exp]	15.6	0.7749
					Lus10033259 [exp]	17.3	0.8719
AT2G37030			SAUR-like auxin-responsive pro...		Lus10013808 [exp]	23.1	0.8753
					Lus10005025 [exp]	23.2	0.8192
AT5G02640			unknown protein		Lus10038485 [exp]	24.8	0.8408
AT2G37030			SAUR-like auxin-responsive pro...		Lus10026521 [exp]	27.2	0.8722
					Lus10014090 [exp]	29.3	0.8169

Compare expression of checked genes

Lus10042281 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.