Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42010 942 / 0 PLDBETA1 phospholipase D beta 1 (.1) AT4G00240 907 / 0 PLDBETA2 phospholipase D beta 2 (.1) AT4G11850 895 / 0 PLDGAMMA1, MEE54 maternal effect embryo arrest 54, phospholipase D gamma 1 (.1) AT4G11840 886 / 0 PLDGAMMA3 phospholipase D gamma 3 (.1) AT4G11830 870 / 0 PLDGAMMA2 phospholipase D gamma 2 (.1.2) AT4G35790 678 / 0 ATPLDDELTA ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) AT1G52570 615 / 0 PLDALPHA2 phospholipase D alpha 2 (.1) AT3G15730 614 / 0 PLDALPHA1 phospholipase D alpha 1 (.1) AT5G25370 602 / 0 PLDALPHA3 phospholipase D alpha 3 (.1) AT1G55180 477 / 4e-159 PLDALPHA4, PLDEPSILON phospholipase D alpha 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026375 [exp] 1268 / 0 AT2G42010 1154 / 0.0 phospholipase D beta 1 (.1) Lus10014146 [exp] 1030 / 0 AT2G42010 1254 / 0.0 phospholipase D beta 1 (.1) Lus10006718 [exp] 1020 / 0 AT2G42010 1264 / 0.0 phospholipase D beta 1 (.1) Lus10006819 [exp] 922 / 0 AT2G42010 1465 / 0.0 phospholipase D beta 1 (.1) Lus10005782 [exp] 909 / 0 AT2G42010 1456 / 0.0 phospholipase D beta 1 (.1) Lus10026377 [exp] 798 / 0 AT2G42010 838 / 0.0 phospholipase D beta 1 (.1) Lus10001293 [exp] 727 / 0 AT4G35790 1071 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10012699 [exp] 722 / 0 AT4G35790 1075 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10004156 [exp] 706 / 0 AT4G35790 1079 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G112100 [exp] 969 / 0 AT2G42010 1307 / 0.0 phospholipase D beta 1 (.1) Potri.014G074700 [exp] 925 / 0 AT2G42010 1464 / 0.0 phospholipase D beta 1 (.1) Potri.002G152100 [exp] 922 / 0 AT2G42010 1438 / 0.0 phospholipase D beta 1 (.1) Potri.002G016100 [exp] 739 / 0 AT4G35790 1194 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.005G246000 [exp] 735 / 0 AT4G35790 1170 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.003G015000 [exp] 731 / 0 AT4G35790 1088 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.007G060300 [exp] 693 / 0 AT4G35790 1281 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.005G105600 [exp] 688 / 0 AT4G35790 1289 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.006G253900 [exp] 617 / 0 AT3G15730 1144 / 0.0 phospholipase D alpha 1 (.1) Potri.001G193000 [exp] 607 / 0 AT1G52570 1412 / 0.0 phospholipase D alpha 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0479 [flax] [poplar] PLD PF00614 [flax] [poplar] PLDc Phospholipase D Active site motif CL0479 [flax] [poplar] PF12357 [flax] [poplar] PLD_C Phospholipase D C terminal
Representative CDS sequence Show only first row Show all	>Lus10042282 pacid=23154014 polypeptide=Lus10042282 locus=Lus10042282.g ID=Lus10042282.BGIv1.0 annot-version=v1.0 ATGGTACTGAAGTTCTTTTCAGCAACAGACTACAAGTCCATGTTCTCCGTCTCGTCTAACTACCACACAGCGGGCGGTAAGGTAACACTTTACCAAGATG CACATGTGGAGGAAGTTGATCCACATGGTGGTGGAATTAGGGGGTACGAGGGTCGGAGCTGCTGGAGTGATGTGTTTCGGGCGATTAGTGAGGCTCGTAG GCTGGTTTACATAACGGGTTGGTCTGTGAATTACAATGTTAGATTGATTAGGGATGGAGGGAGGATGGATTGCACACTGGGGGAGCTTCTGAAGGCCAAG TCTCAAGAAGGTGTTAGGGTGTTGCTTCTTGTGTGGGATGATCCTACTTCTGGCAGCATTTTAGGCCACAAACATGACGGGATTATGAGCACCGGAGATG AAGAAATAAGGTGCTACTTCAAGAACTCTTCAGTCCAAGTGTTACTATGTCCAAGGTCTCCTGACCAAGGACACAGTTTCATCAAGAAACAGGAAGTTGG AACAATCTACACCCACCATCAGAAAACAGTGATAGCAGATACTGATGCAGGACGAAACAGAAGAAAGATCGTAACTTTTGTCGGAGGCCTCGACTTGTGC AATGGCCGGTACGATACTCAAGAACATTCCCTCTTCAGGACATCACACACTGTCCATAAAAATGACTTCCACAACCCAACTTTCCCAATGCCAAGTGCTG GCTGTCCGAGGGAGCCATGGCATGACTTGCACAGGAAGATCGAAGGTCCAGCTGCGTACGATGTCCTGACAAATTTCGAAGAGCGTTGGTCCAAAGCTTC CAAGCCTCGTGGCATTAATAAGCTGAAATCATCATCACAAGGTGATGCATTGCTGAAGCTGGAAAGAATTCCTGAAATCCTTGGGATCTCAGAGGCTGCT ATCCTAGCTGAAAATGATCCTGAAGCTTGGCATGTTCAGGTCTTTCGCTCGATTGATTCGACTTCTGTGAAAGGATTTCCTGATGATCCTAGACTTGCAA CAAGCAAGAACCTGCACTGTGGGAAGAACATCCTGATAGACATGAGCATCCATGCAGCCTACGTGAATGCGATTCGATCTGCGAAGCATTTTATCTACAT CGAGAACCAGTACTTCCTCGGATCATCATACGCCTGGGATTCCTACAATAACTTGGGTGCCAACAACTTAATACCGATGGAAATCGCGCTCAAGATCGCC AGCAAAATCAGGGCAAACAAAAGGTTTGCTGCGTATATTCTCGTCCCAATGTGGCCGGAAGGTGTCCCTACAGGCGCAGCCACACAACGGATTCTGTTCT GGCAGCAAAAGACGATGCAAATGATGTATGAAACAATCTACAAAGCATTGGTGGAAGTTGGACTTGACAAGACGTACGAGCCACAAGATTTTCTCAACTT CTTCTGCCTCGGAAACCGGGAGGAGGAGGCATCGCCATTGGATCGAGAAGTTGCAGCTTATCCAGGAACAGCAGCACCAAATACTCCTCAGGCGTTGAGT CAGAAAAACAGAAGGTTCATGATTTATGTTCACTCAAAAGGAATGATAGTTGACGACCAATACGTAATCATCGGGTCTGCTAATATCAACCAAAGATCAA TGGAAGGCACCCGCGACAGCGAGATCGCAATGGGTGCATTTCAGCCCCGGCACACTGTGGGAAGAAGTGCCACCCAGCGCCCACACGGCCAGGTGTATGG GTACAGAAACTCACTGTGGGCTGAACACATAGGAAGTGTCGAAGAAAGTTTCAAAATGCCGGAGAGTGTGGAATGTGTAAGAAGGCTGAGGAGCATTGGA GAAGAGAACTGGAAGCAATTTGCAGCAGAAACAGTGACAGAGATGAAAGGTCATCTGTTGAAGTATCCAGTTGAGGTTGATCGAATGGGGAAAGTTGGGC CACTTCCGGGATGCTCGAGTTTCCCAGATGTTGGTGGCAATATCTTGGGATCGTATATTCCTTTGCAGAACAACTTTAACATGTGTGGTTCCTCCATAGC CATTCAGGAAAATGTTAATGCTTTTGGCTCCCTTCTTCCCATTCAAGAGAACCTCACTATTTGA
AA sequence Show only first row Show all	>Lus10042282 pacid=23154014 polypeptide=Lus10042282 locus=Lus10042282.g ID=Lus10042282.BGIv1.0 annot-version=v1.0 MVLKFFSATDYKSMFSVSSNYHTAGGKVTLYQDAHVEEVDPHGGGIRGYEGRSCWSDVFRAISEARRLVYITGWSVNYNVRLIRDGGRMDCTLGELLKAK SQEGVRVLLLVWDDPTSGSILGHKHDGIMSTGDEEIRCYFKNSSVQVLLCPRSPDQGHSFIKKQEVGTIYTHHQKTVIADTDAGRNRRKIVTFVGGLDLC NGRYDTQEHSLFRTSHTVHKNDFHNPTFPMPSAGCPREPWHDLHRKIEGPAAYDVLTNFEERWSKASKPRGINKLKSSSQGDALLKLERIPEILGISEAA ILAENDPEAWHVQVFRSIDSTSVKGFPDDPRLATSKNLHCGKNILIDMSIHAAYVNAIRSAKHFIYIENQYFLGSSYAWDSYNNLGANNLIPMEIALKIA SKIRANKRFAAYILVPMWPEGVPTGAATQRILFWQQKTMQMMYETIYKALVEVGLDKTYEPQDFLNFFCLGNREEEASPLDREVAAYPGTAAPNTPQALS QKNRRFMIYVHSKGMIVDDQYVIIGSANINQRSMEGTRDSEIAMGAFQPRHTVGRSATQRPHGQVYGYRNSLWAEHIGSVEESFKMPESVECVRRLRSIG EENWKQFAAETVTEMKGHLLKYPVEVDRMGKVGPLPGCSSFPDVGGNILGSYIPLQNNFNMCGSSIAIQENVNAFGSLLPIQENLTI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10042282 [exp]	0	1
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Lus10009386 [exp]	1.0	0.9468
AT1G16670			Protein kinase superfamily pro...		Lus10042460 [exp]	1.4	0.9445
AT2G40600			appr-1-p processing enzyme fam...		Lus10034225 [exp]	2.0	0.9280
					Lus10000811 [exp]	3.2	0.8820
AT5G05350			PLAC8 family protein (.1)		Lus10001260 [exp]	3.5	0.9327
AT5G50410			unknown protein		Lus10017246 [exp]	6.3	0.8362
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10039494 [exp]	8.0	0.8589
AT2G23450			Protein kinase superfamily pro...		Lus10019657 [exp]	8.8	0.8687
AT3G17860	ZIM	TIFY6B, JAI3, J...	JASMONATE-INSENSITIVE 3, jasmo...		Lus10017991 [exp]	15.0	0.8908
AT3G17860	ZIM	TIFY6B, JAI3, J...	JASMONATE-INSENSITIVE 3, jasmo...		Lus10041986 [exp]	16.1	0.9104

Compare expression of checked genes

Lus10042282 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.