Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08590 993 / 0 iPGAM2 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1.2) AT1G09780 974 / 0 iPGAM1 2,3-biphosphoglycerate-independent phosphoglycerate mutase 1, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1) AT5G58610 377 / 4e-110 PHD finger transcription factor, putative (.1) AT3G14980 292 / 8e-81 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT1G05380 268 / 2e-73 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1.2) AT5G36740 255 / 5e-69 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT4G14920 240 / 3e-64 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT5G36670 221 / 4e-58 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G63900 208 / 7e-57 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G27980 182 / 4e-46 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026370 [exp] 1152 / 0 AT3G08590 992 / 0.0 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1.2) Lus10031877 [exp] 1064 / 0 AT3G08590 979 / 0.0 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1.2) Lus10031309 [exp] 1061 / 0 AT3G08590 977 / 0.0 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1.2) Lus10026374 [exp] 699 / 0 AT3G14980 177 / 2e-47 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10025386 [exp] 551 / 3e-176 AT5G58610 271 / 4e-77 PHD finger transcription factor, putative (.1) Lus10015266 [exp] 532 / 4e-161 AT5G58610 558 / 7e-176 PHD finger transcription factor, putative (.1) Lus10012522 [exp] 392 / 3e-120 AT5G58610 285 / 4e-84 PHD finger transcription factor, putative (.1) Lus10025387 [exp] 349 / 2e-100 AT5G58610 428 / 5e-132 PHD finger transcription factor, putative (.1) Lus10007741 [exp] 322 / 1e-93 AT5G58610 323 / 4e-96 PHD finger transcription factor, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G142900 [exp] 1055 / 0 AT1G09780 927 / 0.0 2,3-biphosphoglycerate-independent phosphoglycerate mutase 1, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1) Potri.006G113300 [exp] 1049 / 0 AT3G08590 989 / 0.0 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1.2) Potri.009G072600 [exp] 528 / 2e-162 AT5G58610 453 / 1e-139 PHD finger transcription factor, putative (.1) Potri.002G118600 [exp] 379 / 2e-112 AT5G58610 436 / 5e-137 PHD finger transcription factor, putative (.1) Potri.001G392801 [exp] 293 / 2e-80 AT3G14980 620 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.010G087700 [exp] 264 / 2e-71 AT4G14920 805 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.008G152600 [exp] 261 / 2e-70 AT4G14920 769 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.005G211100 [exp] 260 / 5e-70 AT5G36740 635 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.002G051400 [exp] 244 / 3e-65 AT5G36740 625 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.001G153200 [exp] 226 / 9e-63 AT1G05380 340 / 1e-104 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger CL0390 [flax] [poplar] PF06415 [flax] [poplar] iPGM_N BPG-independent PGAM N-terminus (iPGM_N) CL0088 [flax] [poplar] Alk_phosphatase PF01676 [flax] [poplar] Metalloenzyme Metalloenzyme superfamily CL0049 [flax] [poplar] Tudor PF05641 [flax] [poplar] Agenet Agenet domain
Representative CDS sequence Show only first row Show all	>Lus10042283 pacid=23153917 polypeptide=Lus10042283 locus=Lus10042283.g ID=Lus10042283.BGIv1.0 annot-version=v1.0 ATGTCCTTTACTTGTGAGGAAGATGACCACCCCGCCGGGAAGACGAAGCGCCGCCGATCAACCACCGCACATCTCATTCCTCTCCATCAGAAAGTGGAGG TTAGAAGAGAGGAAGAAGGGTTCTCAGGGTCATGGAAGCAAGGGACAGTGGTTGCATTTGCATTTTGCAAGGAAGACTGGCAAGTTAAGTACAGTGTGAA GTATGATCACATCCTCCTCGATGACATGTCCGATTTCCTCGTGGGTTCGGTGCATGTTTCTCTCTTTGTGGATGATGGTAATGATGATGACGACATTAGG CCAATGCCGCCAAAACTTGAGTGTAACGAGTGGATTCTGCCCTATGGATTGTGTGTGGATGTGAAGTACAATGATTGTTGGTGGGAAGGTGTTATATTCG ATCATGAAGATGGATCGGGCAAACGGATTGTCTTTTTCCCTTATTCGGGCGATGAAATGCCGGTTCCTCTTGATGCAATGAGGATCTCTCAGGACTGGGA TCGATTCTCCGGGGAGTGGAAGCGCCGCGGGATGTGGCTGTTTCTTGAGTTGGTTGGTGAATATGAACAAGAGGAGCATTGTCTTCCTGTTTCTGTCCAG CAACTCTGGGATGACTTGCAGAGTAAGGTAGGTTTTAAGAAGCTTGGAGGGTGGTGGTGGAATTCATCTTCAAGAACTATGTGGGAAGAGTTGCTTTCGG ACACTATCGAGGATAATCTGGAACTCGTGTTGAACTGTCTTTTCCAAGAGATCAGCCTTCCAGAAGGTATTAGCAAGTTGTCTGTCTTTACCAAATTAGT TTCTAATCCTAGTACTACATATGCCAAAGGAGATTTGGGTGAGACACATGATCCCGAGCTAACTCATAAAACTGCATTATCTCCTCCAAAGATAAACGGT TCGATTAAGAGTGTTCCGGTATCGAACACAAATTGCCATGCAAATGGTCATTCTGTGCTACCTCCAGTCTCATTAGGCTCGAGTAGTTTCTTCATTTTTG ATGAAGCAATTGCCAGGTCTAGTCCTCCCGAGAAGTTCACCATTAGTTTCGCGAGTTCTCCAGACATCGGAAGTAGTTGGAGTACTCCAACCAAGAACCA TGTTTGTACTAAAGCTATTGATGATTTGGACGTGCATGTTGAACCTGAGTACTGGCCGCAAGCAATTGTGGATTGGTATATCTTTTGCGGTTACAAGTGG TTTAGGCCCAGAGAGGATTCAAGAGGAGGAAACTATCAAATGCTGGCGAAAAGGGCAAGGAGTCACCTTGCAGCTGTGGGATGGAAGTTCGTTAGTATAT TTTCCAATGGTAAAAGGGCCATGAAACAAATATCACCAAATGGAAAGTCATACTATTCGCTTCGAAAGTCTTGCAAAGTATGCATGGAAAACAGTGGCAT AGATGTTCCTTCTGAACCCACCAAACAGCACAATGTATTTATAAGAGGCACTCAAAGTTCTCAAAGTTTGAGGACTTCTGAAGGTCTTACTAAACCAAAA AGTAATGGGGGAGTTGCTCAGCAGACACATCTACCTCCTAGCGATAGAGTACAGAACAACATTCATGTGACTAAACCATCACACAATAATCCTCGGACGG TGTTGGGTTGGCTATTGGAGAACAATGTCGTATCGTCAAGGACAAAAGTGTACTACTACCGTAGTGCTGATTTGGGAGACAGTTCCACTGTAGAAGGACG CATAACTCGCAATGGCATCAAGTGCAGCTGTTGCAAGGAGATATACTCTCTTAGTAAATTTCAAGAACATCTTGGTGGGAAATGTATCAGCAACTACAGT CGTGGACCCGCTTCCAACATATATCTGAAAGATGGAAGGTCTCTGCTAGATTGTCAGTTGCAAATAATGCACGATGCTAAGTTGAGAAGCTTGAGAACGG GAAAACAACACGGGATGGTACAGGGAAAGAAGCTGCAGGGGGAGAACGACTGTGTATGTTCGGCTTGTCGGTATGGAGGAGAACTCATTTTGTGTGACCT ATGTCCATCCTCTTTCCATCAAAGTTGCCTAAATTTGGCGGTTGTTCCAGATGGAGACTGGTTCTGCCCGTCCTGCTGCTGTAGAATTTGTTCCAAAAGG TCACAAAAGAGCGGTGAATGTACTGTCGATGAACATATGATCAGTTGTGCCCAGTGTGAGCATAAATATCACAGTTCATGCTTGAGGCACAAGGGAATAG ATGACTTGGAACATCATCCTAAAAGAAACTGGTTTTGCAGCAGCAATTGTAAATCGATATCCCGCTCTCTCGCCGCACTTCTAGGAAAATCAGTCCCAGT TGGCGTGGAGAATCTTACTTGGACCATGCTAAAACTTGAGGAGTCGGACAACTCTAGATTTGGCGGTTTGAGTATCGAGATGAAGGCTCAGAGCTACAGC AAGCTCAATATTGCCCTTCAAGTCATGCAAGAGTGTTTCGATCCACTGGAAGAACCACACACAAGGAGAGATATCATCAGAGAGATTATTTTCAGCAAAA GATCAGAGCTGAGACGTCTGGACTTTTCGGGCTGCTATACAGTAATATTGGAGAAAGATGATGAAGTGATTAGTGTGGCTACTTTAAGGATTTTCGGAGA GGAAGTGGCAGAAGTACCACTCATCGGGACAGGGCTTCAACATCGTTGTCGTGGAATGTGTCGCATATTAATGAATGTGATTGAGAAGAAGCTCGTCGAG TTAGGAGTTCAACGGCTAGTTCTGCCTGCTGTTCCTAGCCTGTTGAACAAATGGACCGGTTCTTTTGGCTTTTCGAGAATGACAAAGGATGAAAGGTTAC TCTTCATGGATTGCACCTTCGTCGAGTTTCAGGAAACCATCATGTGTCACAAGCAGTTGACTGCAGCTCCTTCAAAACCAGAAATCCAACCAGTGGCTCA GACTCCTGTTTGCACAATTAGTGATGATGATGATCTCGGTTTATCAACTCCGGTCTCTGAAGTCGTTCAAGAAGATCAAGCAGACAGAGAAGTAACCGAA CATTTGGGGAAATGTGACTTGCGATCATCCGAGAAAGACGAGCCCGCTGTTCTCGTTCATAGTCCCCCCTACTTTCCCCCATTCAAACCACAGTCTTCGT CCCCGTCTCCGATTCTTCCTCCGTTAATCTTCGCTAGTCGAATCTCAGGGAACATGGGTAGCTCCGGCGAGAACGCATGGAAGCTGGCGGACCATCCGAA GCTTCCCAAGGGGAAGACGATTGCCTTGATTGTTTTGGACGGCTGGGGTGAGGCTAAGCCCGATCAGTACAATTGTATCCATGTTGCTGAAACTCCCACC ATGGATTCTTTCAAGACGACTGCTCCCGAAAAGTGGAGATTGATTAAGGCCCATGGAACTGCAGTGGGTCTCCCCAGCGAGGATGACATGGGTAACAGTG AAGTTGGCCACAATGCTCTTGGAGCTGGCCGTATCTTCGCTCAAGGTGCCAAGCTTGTTGATGCTGCTCTGGCAACTGGGAAGATGTTTGAGGGAGAGGG ATTCAAGTACATCCAACAATCCTTTGATAAGGGAACACTGCACCTAATTGGGTTGTTGAGTGATGGTGGAGTTCACTCCAGGCTTGATCAAGTTCAGTTG TTGCTTAAAGGTGCAAGTGAGCATGGTGCCAAAAGGATTCGCCTCCACATTCTTACTGATGGACGTGATGTGATCGATGGTACCAGTGTTGGGTTTGTGG AAACTCTGGAGAATGATCTTGCCAACTTGCGGGAGAAGGGTGTTGATGCACAGATTGCATCCGGTGGAGGACGCATGTATGTGACCATGGATCGTTATGA GAACGACTGGAGTGTTGTGAAGAGAGGATGGGATGCCCAGGTTCTTGGTGAAGCCCCTTACAAGTTTAAGAGCGCGGTAGAAGCCGTTAAAAAGCTAAGG GAAACCCCTAAAGCCAATGACCAGTATCTGCCTCCTTTTGTTATTGTTGATGACAGTGGTAAGGCTGTCGGACCAATTGTTGATGGTGATGCAGTCGTCA CATTCAACTTCCGTGCTGATCGTATGACTATGCTTGCAAAGGCACTTGAATACGCCGACTTTGACAAGTTCGACCGTGTGAGAGTTCCTAAGATCAATTA CGCTGGAATGCTCCAGTATGATGGCGAGTTGATGCTCCCAAGCCGTTATCTTGTTTCTCCTCCAGAAATTGAGAGAACATCTGGTGAATATTTGGTGCAT AATGGTGTTAGCACCTTTGCTTGCAGTGAGACGGTGAAATTCGGTCACGTTACCTTCTTCTGGAATGGAAATCGCTCCGGATATTTCAACTCGGAAATGG AAGAATACGTTGAGATTCCAAGTGATGTTGGGATCACGTTCAATGTCAAACCTAAGATGAAGGCGATAGAGATTGCAGAAAAGGCACGGGATGCCATACT CAGCGGAAAATTCAATCAGGTTCGTGTTAACTTACCAAATGGAGACATGGTGGGACACACTGGAGATGTTGAAGCTACTGTGGTTAGTTGCAAGGTTGCT GATGAAGCCGTCAAGATCATGATTGACGCGATAGAGCAAGTCGGTGGAATTTACGTGGTCACAGCTGATCACGGAAATGCTGAGGACATGGTTAAGAGAG ACAAATCTGGGAAGCCAGCACTCGACAAGTCTGGCAACGTTCAAATCCTGACCTCGCACACCCTCCAGCCTGTACCTATTGCGATCGGTGGTCCAGGGTT GGTACCCGGGGTGAGGTTCCGCACTGATGTCCCAACCGGTGGACTTGCTAATGTTGCAGCAACTGTGATGAATCTGCATGGGCTTGAGGCCCCAAGCGAT TACGAGACAACCCTGATCGAAGTCGTTGATTAG
AA sequence Show only first row Show all	>Lus10042283 pacid=23153917 polypeptide=Lus10042283 locus=Lus10042283.g ID=Lus10042283.BGIv1.0 annot-version=v1.0 MSFTCEEDDHPAGKTKRRRSTTAHLIPLHQKVEVRREEEGFSGSWKQGTVVAFAFCKEDWQVKYSVKYDHILLDDMSDFLVGSVHVSLFVDDGNDDDDIR PMPPKLECNEWILPYGLCVDVKYNDCWWEGVIFDHEDGSGKRIVFFPYSGDEMPVPLDAMRISQDWDRFSGEWKRRGMWLFLELVGEYEQEEHCLPVSVQ QLWDDLQSKVGFKKLGGWWWNSSSRTMWEELLSDTIEDNLELVLNCLFQEISLPEGISKLSVFTKLVSNPSTTYAKGDLGETHDPELTHKTALSPPKING SIKSVPVSNTNCHANGHSVLPPVSLGSSSFFIFDEAIARSSPPEKFTISFASSPDIGSSWSTPTKNHVCTKAIDDLDVHVEPEYWPQAIVDWYIFCGYKW FRPREDSRGGNYQMLAKRARSHLAAVGWKFVSIFSNGKRAMKQISPNGKSYYSLRKSCKVCMENSGIDVPSEPTKQHNVFIRGTQSSQSLRTSEGLTKPK SNGGVAQQTHLPPSDRVQNNIHVTKPSHNNPRTVLGWLLENNVVSSRTKVYYYRSADLGDSSTVEGRITRNGIKCSCCKEIYSLSKFQEHLGGKCISNYS RGPASNIYLKDGRSLLDCQLQIMHDAKLRSLRTGKQHGMVQGKKLQGENDCVCSACRYGGELILCDLCPSSFHQSCLNLAVVPDGDWFCPSCCCRICSKR SQKSGECTVDEHMISCAQCEHKYHSSCLRHKGIDDLEHHPKRNWFCSSNCKSISRSLAALLGKSVPVGVENLTWTMLKLEESDNSRFGGLSIEMKAQSYS KLNIALQVMQECFDPLEEPHTRRDIIREIIFSKRSELRRLDFSGCYTVILEKDDEVISVATLRIFGEEVAEVPLIGTGLQHRCRGMCRILMNVIEKKLVE LGVQRLVLPAVPSLLNKWTGSFGFSRMTKDERLLFMDCTFVEFQETIMCHKQLTAAPSKPEIQPVAQTPVCTISDDDDLGLSTPVSEVVQEDQADREVTE HLGKCDLRSSEKDEPAVLVHSPPYFPPFKPQSSSPSPILPPLIFASRISGNMGSSGENAWKLADHPKLPKGKTIALIVLDGWGEAKPDQYNCIHVAETPT MDSFKTTAPEKWRLIKAHGTAVGLPSEDDMGNSEVGHNALGAGRIFAQGAKLVDAALATGKMFEGEGFKYIQQSFDKGTLHLIGLLSDGGVHSRLDQVQL LLKGASEHGAKRIRLHILTDGRDVIDGTSVGFVETLENDLANLREKGVDAQIASGGGRMYVTMDRYENDWSVVKRGWDAQVLGEAPYKFKSAVEAVKKLR ETPKANDQYLPPFVIVDDSGKAVGPIVDGDAVVTFNFRADRMTMLAKALEYADFDKFDRVRVPKINYAGMLQYDGELMLPSRYLVSPPEIERTSGEYLVH NGVSTFACSETVKFGHVTFFWNGNRSGYFNSEMEEYVEIPSDVGITFNVKPKMKAIEIAEKARDAILSGKFNQVRVNLPNGDMVGHTGDVEATVVSCKVA DEAVKIMIDAIEQVGGIYVVTADHGNAEDMVKRDKSGKPALDKSGNVQILTSHTLQPVPIAIGGPGLVPGVRFRTDVPTGGLANVAATVMNLHGLEAPSD YETTLIEVVD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08590		iPGAM2	2,3-biphosphoglycerate-indepen...		Lus10042283 [exp]	0	1
AT5G64570		ATBXL4, XYL4	ARABIDOPSIS THALIANA BETA-D-XY...		Lus10020966 [exp]	3.9	0.9253
AT2G42520			P-loop containing nucleoside t...		Lus10015976 [exp]	4.2	0.9189
AT5G08680			ATP synthase alpha/beta family...		Lus10034631 [exp]	7.0	0.9306
AT2G13290			beta-1,4-N-acetylglucosaminylt...		Lus10043257 [exp]	7.7	0.8914
AT1G11680		EMB1738, CYP51A...	embryo defective 1738, CYTOCHR...		Lus10004146 [exp]	12.3	0.9273
AT5G40850		UPM1	urophorphyrin methylase 1 (.1....		Lus10005047 [exp]	13.4	0.9187
AT5G08680			ATP synthase alpha/beta family...		Lus10035264 [exp]	16.7	0.9242
AT1G12120			Plant protein of unknown funct...		Lus10024611 [exp]	19.0	0.9035
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10040992 [exp]	20.0	0.9205
AT5G65750			2-oxoglutarate dehydrogenase, ...		Lus10015205 [exp]	20.9	0.9158

Compare expression of checked genes

Lus10042283 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.