Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17730 345 / 2e-120 NAC ANAC057 NAC domain containing protein 57 (.1) AT1G65910 280 / 6e-90 NAC ANAC028 NAC domain containing protein 28 (.1) AT5G17260 275 / 1e-89 NAC ANAC086 NAC domain containing protein 86 (.1) AT3G03200 271 / 4e-88 NAC ANAC045 NAC domain containing protein 45 (.1) AT1G54330 243 / 2e-79 NAC ANAC020 NAC domain containing protein 20 (.1) AT5G46590 224 / 3e-72 NAC ANAC096 NAC domain containing protein 96 (.1) AT4G17980 212 / 9e-68 NAC ANAC071 NAC domain containing protein 71 (.1) AT3G10500 212 / 2e-64 NAC ANAC053 NAC domain containing protein 53 (.1) AT1G32510 202 / 7e-64 NAC ANAC011 NAC domain containing protein 11 (.1) AT4G35580 209 / 1e-63 NAC NTL9, CBNAC NAC transcription factor-like 9 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026373 [exp] 501 / 0 AT3G17730 348 / 2e-121 NAC domain containing protein 57 (.1) Lus10007377 [exp] 280 / 3e-89 AT1G65910 431 / 7e-143 NAC domain containing protein 28 (.1) Lus10020794 [exp] 281 / 1e-87 AT5G10360 449 / 8e-153 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) Lus10010959 [exp] 265 / 2e-84 AT1G65910 389 / 9e-128 NAC domain containing protein 28 (.1) Lus10030978 [exp] 229 / 3e-73 AT4G17980 273 / 6e-91 NAC domain containing protein 71 (.1) Lus10035373 [exp] 229 / 4e-73 AT4G17980 280 / 2e-93 NAC domain containing protein 71 (.1) Lus10023537 [exp] 205 / 3e-63 AT3G10490 331 / 2e-110 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10037939 [exp] 202 / 4e-62 AT3G10490 415 / 2e-143 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10017915 [exp] 199 / 4e-62 AT1G71930 314 / 4e-107 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G030200 [exp] 367 / 5e-129 AT3G17730 374 / 6e-133 NAC domain containing protein 57 (.1) Potri.012G038100 [exp] 345 / 9e-120 AT3G17730 339 / 4e-118 NAC domain containing protein 57 (.1) Potri.017G139500 [exp] 278 / 1e-88 AT1G65910 461 / 1e-154 NAC domain containing protein 28 (.1) Potri.004G081000 [exp] 276 / 5e-88 AT1G65910 465 / 4e-156 NAC domain containing protein 28 (.1) Potri.008G081500 [exp] 264 / 3e-87 AT1G54330 316 / 1e-107 NAC domain containing protein 20 (.1) Potri.010G174600 [exp] 263 / 9e-87 AT1G54330 290 / 2e-97 NAC domain containing protein 20 (.1) Potri.003G089800 [exp] 237 / 3e-76 AT4G17980 319 / 6e-109 NAC domain containing protein 71 (.1) Potri.001G144400 [exp] 233 / 9e-75 AT4G17980 318 / 2e-108 NAC domain containing protein 71 (.1) Potri.010G229700 [exp] 209 / 1e-64 AT3G10480 418 / 8e-144 NAC domain containing protein 50 (.1.2.3) Potri.002G061300 [exp] 213 / 2e-64 AT1G34190 432 / 3e-145 NAC domain containing protein 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10042284 pacid=23153915 polypeptide=Lus10042284 locus=Lus10042284.g ID=Lus10042284.BGIv1.0 annot-version=v1.0 ATGTCGCCGGTGGGACTGCCGCCGGGTTTCAGATTCCACCCGACCGACGAGGAGCTAGTGAACTACTATCTAAAGAGGAAGATCAACGGCCAGGAGATCG AGCTCGACATCATCCCCGAAGTCGACCTCTACAAGTGCGAGCCATGGGAGCTTTCGGAGAAGTCGTTCCTGCCGAGCAAGGACCCCGAGTGGTACTTCTT CGGCCCCCGGGACAGGAAGTACCCGAACGGGTTCAGGACGAACCGGGCCACTCGAGCCGGGTATTGGAAATCGACCGGAAAGGACCGGAGGGTTGTGAGT CAGACTCGGGTTATTGGGATGAAAAAAACTCTGGTTTACTACCGAGGCAGGGCTCCTCAAGGGCTGAGGACCGATTGGGTGATGCATGAGTATAGGGTTG ATGATAAAGATTGTGAAGATACTTCTGGGCTACAGGACTCATACGCACTATGCCGAGTGTTCAAGAAGAACGGAATATGCACAGAGACAGCAGAACAAGA AATCCAACAATCCTTCGTCTACGGCGGCGCCACTAGCAGCTCCGCCGCAAGAAGAAACAGGACATCGCCAGCTGCCATAATGGAAACTTCCCCGGATGCC GCCATGAATCACGATATCAATCACCTTATGATTGATCAGTACAATAACTACGACAGTACCATGTCACCGGACGTCCCTGTCAACGCCTCCTCCTCGTCCT GCCTCGAAGACGAGGAGAAGGACGTGGACGACAACTCGTGGATGCAGTTCATCACCGACGACGATCCTTGGTCGTCGTCGTCGATGGTCAACGGAGGAGA TGACGTCACTTATCAGCAGCAGCAGCCTCAAGTTCATCATAACCACCACCAGCAACATCATCGTCAAGTCAGTGCTAACACTAGCACATTTACAGACTGA
AA sequence Show only first row Show all	>Lus10042284 pacid=23153915 polypeptide=Lus10042284 locus=Lus10042284.g ID=Lus10042284.BGIv1.0 annot-version=v1.0 MSPVGLPPGFRFHPTDEELVNYYLKRKINGQEIELDIIPEVDLYKCEPWELSEKSFLPSKDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRVVS QTRVIGMKKTLVYYRGRAPQGLRTDWVMHEYRVDDKDCEDTSGLQDSYALCRVFKKNGICTETAEQEIQQSFVYGGATSSSAARRNRTSPAAIMETSPDA AMNHDINHLMIDQYNNYDSTMSPDVPVNASSSSCLEDEEKDVDDNSWMQFITDDDPWSSSSMVNGGDDVTYQQQQPQVHHNHHQQHHRQVSANTSTFTD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17730	NAC	ANAC057	NAC domain containing protein ...		Lus10042284 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Lus10007808 [exp]	1.7	0.9511
AT5G50290			unknown protein		Lus10001236 [exp]	3.2	0.9292
AT1G05610		APS2	ADP-glucose pyrophosphorylase ...		Lus10042456 [exp]	3.5	0.9470
AT5G50290			unknown protein		Lus10042105 [exp]	3.5	0.9435
AT3G17730	NAC	ANAC057	NAC domain containing protein ...		Lus10026373 [exp]	6.5	0.9084
AT5G22870			Late embryogenesis abundant (L...		Lus10041350 [exp]	9.0	0.9179
AT3G20570		AtENODL9	early nodulin-like protein 9 (...		Lus10011158 [exp]	9.4	0.9375
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10043304 [exp]	9.5	0.9272
AT1G10380			Putative membrane lipoprotein ...		Lus10036687 [exp]	11.2	0.9226
AT3G18670			Ankyrin repeat family protein ...		Lus10027721 [exp]	13.0	0.9107

Compare expression of checked genes

Lus10042284 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.