Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73470 154 / 2e-42 unknown protein AT2G17120 73 / 5e-14 LYM2 lysm domain GPI-anchored protein 2 precursor (.1) AT1G77630 54 / 1e-07 LYM3 lysin-motif \(LysM\) domain protein 3, Peptidoglycan-binding LysM domain-containing protein (.1) AT1G21880 51 / 1e-06 LYM1 lysm domain GPI-anchored protein 1 precursor (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026372 [exp] 171 / 2e-48 AT2G17120 249 / 3e-80 lysm domain GPI-anchored protein 2 precursor (.1) Lus10023945 [exp] 155 / 1e-42 AT2G17120 280 / 4e-92 lysm domain GPI-anchored protein 2 precursor (.1) Lus10014441 [exp] 147 / 8e-38 AT4G38380 501 / 2e-167 MATE efflux family protein (.1) Lus10003326 [exp] 123 / 4e-31 AT2G17120 255 / 1e-82 lysm domain GPI-anchored protein 2 precursor (.1) Lus10022630 [exp] 122 / 1e-30 AT2G17120 255 / 1e-82 lysm domain GPI-anchored protein 2 precursor (.1) Lus10026371 [exp] 100 / 5e-22 AT2G01970 912 / 0.0 Endomembrane protein 70 protein family (.1) Lus10018191 [exp] 59 / 5e-09 AT1G21880 550 / 0.0 lysm domain GPI-anchored protein 1 precursor (.1.2) Lus10025643 [exp] 57 / 2e-08 AT1G21880 547 / 0.0 lysm domain GPI-anchored protein 1 precursor (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G033200 [exp] 160 / 9e-45 AT1G73470 395 / 1e-137 unknown protein Potri.004G183500 [exp] 87 / 1e-18 AT2G17120 318 / 3e-107 lysm domain GPI-anchored protein 2 precursor (.1) Potri.009G143300 [exp] 82 / 6e-17 AT2G17120 311 / 1e-104 lysm domain GPI-anchored protein 2 precursor (.1) Potri.002G084800 [exp] 51 / 1e-06 AT1G21880 554 / 0.0 lysm domain GPI-anchored protein 1 precursor (.1.2) Potri.005G176700 [exp] 51 / 1e-06 AT1G21880 548 / 0.0 lysm domain GPI-anchored protein 1 precursor (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042285 pacid=23153992 polypeptide=Lus10042285 locus=Lus10042285.g ID=Lus10042285.BGIv1.0 annot-version=v1.0 ATGGCCACGGCTGTTCTTACCTCCACCGCATCTTGCTCTTCTCCGTTTCATTACGCCTCTTGTTCGTACGGGGCTCACAATCACACTTTGCCTCCGCCTC CGTTTACAAAAATTCCGGCGAAGTTACACCTTCTTTGTTCCGCTCGCCGTAGAAACAGGTTAGGGCTAGCTATTCGTAGTCAAGCTGCAGTATCACCAGC GCAAGGCCAAGGCGCGTATGATCCTGAGCTTCGATCGGTGCTTGAACTCGCTACGCACTCCGAGTTGTGCGAGTTGGATGATATTTTGTTCGGTCCTAGT TACTTCAGTCCTCTGCTTAAGTCGGTGGCGAAGAGAGCTGAAGTTGATTATGTTATGATCGAGCAAGACCTTGAGGGGCGAGAGGATTTCATTGCTGCAC TTGAATCCCGTTTTCTATTCCTAGCAGCTGATGCACGGTCTACGTTAAGGGGTTGGAGGCCTTCATATAGAGATGTGTTGCTTACTGTTAGGAAGAAATG GGCCGCCGTCAACTCCCCACTCTACTCTTCCTCCTCATCACAACAATATCCACACTCCAAACTTCACTCACCGACGACGACGATGACTACACCTCTGACT TCCCTCCCAAATGCAACGTCTTACTTGACTACATATCGCCGGAGAACGCCACCACCACATTCGCCTCCGTCCAGTCCGCCTACAGAATCCAAAACATCCG CCTCTTATTCGGAGCCAACAACCTCCCTCTCACGACACCACCAAACCAAACCATCACGCCAAAACAGAGGATCAAGATCCCCTTCCCCTGCCCCAGCCGC GGCCGCTACGGGGTTTCAGACCGGATTCCGGTTTACACCTTCAAGAAGGGCGACGTGCTGGATGACGTGGCGGGAACGTGTTCGGCGGAGTGCTCCCCGC CGAAGACATTGTGTCTGTGATGCATTACGGACACTTGCCATTGATGGGATTGCTGCAAGGTTCGCGAGTAGCGTGGAGGCTTTGAAGGGTCTTAATGAGT TGAACAACGGGTCGGTTTTGTTGCCGGTTCAAGTTCTCGATGTTCCTCTCAAAGCTTGTAGTTCATCAATTCGACCCGATTCAGAAGACTCGCAGCTGCT GTTAGCTAAGGGAACTTACACCTTCACAGCTAACGACTGTGTCCAATGCAGCTGCGATGCCTCGAACAATTGGATCCATCCGAGATTAAGCCGTCGAACT GGTCAACTTGCCCTACTATGTATGCAATGTGGAGGAGATAATTCCGTAATGTTAGGGAATTCCACCACTTCAGATTGCGGCAGCGCCGCCACCTGCACCT ACGCTGGTTTCTCCTCCAACCAAACCATTTTCACCATCCTTGACCACACTTCCCCTGCCGCTCCCCTTGGGGGCCCGTCCGCCGCTCCATCCGCCAGCCC CCGTAAGGTATTACTATAG
AA sequence Show only first row Show all	>Lus10042285 pacid=23153992 polypeptide=Lus10042285 locus=Lus10042285.g ID=Lus10042285.BGIv1.0 annot-version=v1.0 MATAVLTSTASCSSPFHYASCSYGAHNHTLPPPPFTKIPAKLHLLCSARRRNRLGLAIRSQAAVSPAQGQGAYDPELRSVLELATHSELCELDDILFGPS YFSPLLKSVAKRAEVDYVMIEQDLEGREDFIAALESRFLFLAADARSTLRGWRPSYRDVLLTVRKKWAAVNSPLYSSSSSQQYPHSKLHSPTTTMTTPLT SLPNATSYLTTYRRRTPPPHSPPSSPPTESKTSASYSEPTTSLSRHHQTKPSRQNRGSRSPSPAPAAAATGFQTGFRFTPSRRATCWMTWRERVRRSAPR RRHCVCDALRTLAIDGIAARFASSVEALKGLNELNNGSVLLPVQVLDVPLKACSSSIRPDSEDSQLLLAKGTYTFTANDCVQCSCDASNNWIHPRLSRRT GQLALLCMQCGGDNSVMLGNSTTSDCGSAATCTYAGFSSNQTIFTILDHTSPAAPLGGPSAAPSASPRKVLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73470			unknown protein		Lus10042285 [exp]	0	1
AT5G36950		DEGP10	DegP protease 10 (.1)		Lus10024525 [exp]	1.4	0.9017
AT2G33860	ARF	ARF3, ETT	ETTIN, AUXIN RESPONSE TRANSCRI...		Lus10013942 [exp]	3.3	0.9129
AT2G33860	ARF	ARF3, ETT	ETTIN, AUXIN RESPONSE TRANSCRI...		Lus10005264 [exp]	4.6	0.8995
AT4G38430		ATROPGEF1, ROPG...	rho guanyl-nucleotide exchange...		Lus10025101 [exp]	7.4	0.8781
AT2G05760			Xanthine/uracil permease famil...		Lus10035311 [exp]	9.2	0.8825
AT2G48020			Major facilitator superfamily ...		Lus10008179 [exp]	9.5	0.8811
AT4G16490			ARM repeat superfamily protein...		Lus10014691 [exp]	13.6	0.8874
AT3G27180			S-adenosyl-L-methionine-depend...		Lus10012527 [exp]	16.9	0.8775
AT1G49970		SVR2, NCLPP5, C...	SUPPRESSOR OF VARIEGATION 2, N...		Lus10020990 [exp]	19.4	0.8812
AT1G24610			Rubisco methyltransferase fami...		Lus10021783 [exp]	20.6	0.8854

Compare expression of checked genes

Lus10042285 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.