Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01970 932 / 0 Endomembrane protein 70 protein family (.1) AT1G14670 932 / 0 Endomembrane protein 70 protein family (.1) AT5G37310 897 / 0 Endomembrane protein 70 protein family (.1) AT1G08350 536 / 0 Endomembrane protein 70 protein family (.1.2) AT1G10950 388 / 7e-128 AtTMN1 transmembrane nine 1 (.1) AT2G24170 306 / 5e-96 Endomembrane protein 70 protein family (.1) AT1G55130 299 / 4e-93 AtTMN6 transmembrane nine 6, Endomembrane protein 70 protein family (.1) AT3G13772 298 / 6e-93 AtTMN7 transmembrane nine 7 (.1) AT5G10840 288 / 8e-89 Endomembrane protein 70 protein family (.1) AT5G25100 287 / 1e-88 Endomembrane protein 70 protein family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031308 [exp] 1023 / 0 AT2G01970 1061 / 0.0 Endomembrane protein 70 protein family (.1) Lus10031876 [exp] 1022 / 0 AT2G01970 1059 / 0.0 Endomembrane protein 70 protein family (.1) Lus10026371 [exp] 896 / 0 AT2G01970 912 / 0.0 Endomembrane protein 70 protein family (.1) Lus10004873 [exp] 526 / 0 AT1G08350 668 / 0.0 Endomembrane protein 70 protein family (.1.2) Lus10001368 [exp] 379 / 2e-124 AT1G10950 990 / 0.0 transmembrane nine 1 (.1) Lus10001291 [exp] 377 / 1e-123 AT1G10950 1000 / 0.0 transmembrane nine 1 (.1) Lus10012697 [exp] 353 / 3e-113 AT1G10950 947 / 0.0 transmembrane nine 1 (.1) Lus10015463 [exp] 345 / 8e-112 AT1G10950 910 / 0.0 transmembrane nine 1 (.1) Lus10037643 [exp] 308 / 2e-96 AT3G13772 1134 / 0.0 transmembrane nine 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G144181 [exp] 922 / 0 AT5G37310 979 / 0.0 Endomembrane protein 70 protein family (.1) Potri.017G144241 [exp] 922 / 0 AT5G37310 989 / 0.0 Endomembrane protein 70 protein family (.1) Potri.004G075450 [exp] 902 / 0 AT5G37310 953 / 0.0 Endomembrane protein 70 protein family (.1) Potri.012G042300 [exp] 779 / 0 AT1G14670 762 / 0.0 Endomembrane protein 70 protein family (.1) Potri.004G203200 [exp] 560 / 0 AT1G08350 671 / 0.0 Endomembrane protein 70 protein family (.1.2) Potri.004G075525 [exp] 514 / 0 AT5G37310 523 / 0.0 Endomembrane protein 70 protein family (.1) Potri.004G218300 [exp] 412 / 2e-137 AT1G10950 920 / 0.0 transmembrane nine 1 (.1) Potri.003G015300 [exp] 404 / 4e-134 AT1G10950 897 / 0.0 transmembrane nine 1 (.1) Potri.003G038700 [exp] 306 / 6e-96 AT3G13772 1085 / 0.0 transmembrane nine 7 (.1) Potri.006G184200 [exp] 295 / 1e-91 AT2G24170 961 / 0.0 Endomembrane protein 70 protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02990 [flax] [poplar] EMP70 Endomembrane protein 70
Representative CDS sequence Show only first row Show all	>Lus10042286 pacid=23153853 polypeptide=Lus10042286 locus=Lus10042286.g ID=Lus10042286.BGIv1.0 annot-version=v1.0 ATGGCGGGGAAGAAGATGGTGGCGCTCCTATTCGTCGCCGTCTTGGTGGTCGTCTTCGGAGCAGATCAGGTGAGATCTGACGCCTCCGATCACCGGTACA AAGACGGAGATCAGGTTCCTCTCTATGCCAACAAGGTTGGACCGTTTCACAACCCGAGTGAAACATACCGTTATTTTGACCTTCCATTCTGCTTTCCAGC ACACATGAAGGAAAAAAAGGAGGCTCTGGGTGAAGTACTCAATGGGGATCGGTTAGTTAGTGCTCCATACCAGCTTGACTTCCTCCGTGAGAAGGATTCT GAAGTTGTTTGTAAGAAGAGGCTTTCGAAGGAAGAAGTGGCCCAGTTCAGAGCTGCTGTTAAGAAAGATTACTATTTCCAGATGTATTATGATGACTTAC CTATCTGGGGGTTCATAGGGAAGGTTGACAAGGAAGGCAAAGACCCCAGCGACTATAAATATTATCTTTTCAAGCACATTCACTTTGATATCTTTTACAA CAAGGACCGTGTGATTGAAATCAATGTCCGAACTGATCCTAATGCACTGGTGGATGTTACTGAAGATAAGGAGGTAGATGTGGAGTTCTTATATACTGTG AAGTGGAAGGAAACCAATACTCCTTTTGATAAAAGGATGGACAAGTACTCTCAGTCTTCTTCATTGCCCCATCATTTGGAGATTCACTGGTTCTCAATCA TCAATTCTTGTGTGACGGTTCTGCTTCTTACCGGATTTTTGGCTACGATTCTCATGCGGGTTCTTAAGAATGATTTTGTCAAGTACGCTCATGATGAGGA AGCTGCTGAAGACCAGGAAGAGACAGGTTGGAAGTATATTCACGGAGACGTGTTTAGATATCCAAAATACAAATCCCTATTTGCTGCATCTCTCGGTTCT GGAACCCAATTATTCACTTTGACCATTTTCATCTTTATACTGGCATTGGTTGGGGTGTTTTATCCATACAACCGGGGAGCCCTATTCACTGCATTAGTGG TCATATATGCTCTCACATCAGGAATCGCAGGATACACTGCAACTTCCTTTTACTGTCAGCTTGAAGGAACTAACTGGGTTAGGAACCTGCTGTTGACTGG ATGTCTCTTCTGCGGGCCTCTTTTCCTAACCTTCTGTTTCCTTAACACTGTTGCAATCGTCTACACTGCTACTGCCGCTCTTCCTTTCGGTACAATTGTT GTGATTGTGCTCATATGGACACTTGTGACTTCCCCACTACTTGTTTTGGGTGGAATTGCCGGTAAGAATAGCAAGGCTGAGTTCCAAGCTCCTTGCCGCA CCACCAAATATCCCAGGGAGATTCCACCCTTGCCATGGTACAGGGGAACCATCCCGCAGATGGCTATGGCTGGATTCCTTCCATTCAGTGCTATATACAT CGAGCTGTACTACATCTTTGCCAGTGTGTGGGGTCACAGGATCTATACTATCTACAGCATCTTGTTCATCGTATTCATCATTCTCCTCATAGTCACTGCT TTCATTACTGTGGCATTGACCTATTTCCAACTCGCTGCTGAGGATCATGAGTGGTGGTGGAGGTCGTTCCTATGCGGTGGATCGACTGGGCTATTTATCT ATGCATACTGCCTGTACTACTACTATGCTCGCTCGGACATGTCTGGTTTCATGCAAACATCCTTCTTCTTCGGGTACATGGCCTGCATCTGCTACGGCTT CTTCCTCATGCTCGGAAGCGTAGGGTTCCGTGCTGCCCTGCTTTTCGTCCGTCACATCTATCGATCGATCAAGTGCGAGTAG
AA sequence Show only first row Show all	>Lus10042286 pacid=23153853 polypeptide=Lus10042286 locus=Lus10042286.g ID=Lus10042286.BGIv1.0 annot-version=v1.0 MAGKKMVALLFVAVLVVVFGADQVRSDASDHRYKDGDQVPLYANKVGPFHNPSETYRYFDLPFCFPAHMKEKKEALGEVLNGDRLVSAPYQLDFLREKDS EVVCKKRLSKEEVAQFRAAVKKDYYFQMYYDDLPIWGFIGKVDKEGKDPSDYKYYLFKHIHFDIFYNKDRVIEINVRTDPNALVDVTEDKEVDVEFLYTV KWKETNTPFDKRMDKYSQSSSLPHHLEIHWFSIINSCVTVLLLTGFLATILMRVLKNDFVKYAHDEEAAEDQEETGWKYIHGDVFRYPKYKSLFAASLGS GTQLFTLTIFIFILALVGVFYPYNRGALFTALVVIYALTSGIAGYTATSFYCQLEGTNWVRNLLLTGCLFCGPLFLTFCFLNTVAIVYTATAALPFGTIV VIVLIWTLVTSPLLVLGGIAGKNSKAEFQAPCRTTKYPREIPPLPWYRGTIPQMAMAGFLPFSAIYIELYYIFASVWGHRIYTIYSILFIVFIILLIVTA FITVALTYFQLAAEDHEWWWRSFLCGGSTGLFIYAYCLYYYYARSDMSGFMQTSFFFGYMACICYGFFLMLGSVGFRAALLFVRHIYRSIKCE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01970			Endomembrane protein 70 protei...		Lus10042286 [exp]	0	1
AT1G17270			O-fucosyltransferase family pr...		Lus10003929 [exp]	1.4	0.9697
AT2G20840			Secretory carrier membrane pro...		Lus10039794 [exp]	2.0	0.9590
AT4G12650			Endomembrane protein 70 protei...		Lus10016072 [exp]	6.3	0.9441
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10007584 [exp]	6.5	0.9522
AT4G00110		GAE3	UDP-D-glucuronate 4-epimerase ...		Lus10000787 [exp]	7.3	0.9304
AT5G01890			Leucine-rich receptor-like pro...		Lus10022738 [exp]	7.5	0.9304
AT5G10840			Endomembrane protein 70 protei...		Lus10026254 [exp]	7.9	0.9406
AT2G20840			Secretory carrier membrane pro...		Lus10018562 [exp]	8.1	0.9348
AT2G41770			Protein of unknown function (D...		Lus10031076 [exp]	9.5	0.9415
AT1G18580		GAUT11	galacturonosyltransferase 11 (...		Lus10007979 [exp]	9.9	0.9387

Compare expression of checked genes

Lus10042286 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.