Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28110 583 / 0 SCPL45 serine carboxypeptidase-like 45 (.1.2) AT2G33530 571 / 0 SCPL46 serine carboxypeptidase-like 46 (.1) AT1G43780 395 / 6e-134 SCPL44 serine carboxypeptidase-like 44 (.1) AT5G42240 389 / 7e-132 SCPL42 serine carboxypeptidase-like 42 (.1) AT5G42230 372 / 5e-125 SCPL41 serine carboxypeptidase-like 41 (.1) AT2G12480 352 / 1e-117 SCPL43 serine carboxypeptidase-like 43 (.1.2) AT4G30610 351 / 4e-117 SCPL24, BRS1 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) AT2G35770 340 / 9e-113 SCPL28 serine carboxypeptidase-like 28 (.1) AT2G24000 334 / 2e-110 SCPL22 serine carboxypeptidase-like 22 (.1.2) AT3G02110 324 / 1e-106 SCPL25 serine carboxypeptidase-like 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036016 [exp] 550 / 0 AT1G28110 690 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10010331 [exp] 549 / 0 AT1G28110 540 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10021856 [exp] 544 / 0 AT1G28110 525 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10016722 [exp] 543 / 0 AT1G28110 688 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10013395 [exp] 541 / 0 AT1G28110 534 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10040324 [exp] 526 / 0 AT2G33530 532 / 0.0 serine carboxypeptidase-like 46 (.1) Lus10023446 [exp] 521 / 0 AT1G28110 520 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10003302 [exp] 509 / 9e-179 AT1G28110 498 / 2e-174 serine carboxypeptidase-like 45 (.1.2) Lus10030317 [exp] 507 / 8e-178 AT1G28110 501 / 2e-175 serine carboxypeptidase-like 45 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G036500 [exp] 671 / 0 AT1G28110 619 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.012G105500 [exp] 590 / 0 AT1G28110 751 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.003G164000 [exp] 587 / 0 AT1G28110 758 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.001G065900 [exp] 579 / 0 AT1G28110 766 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.015G104700 [exp] 560 / 0 AT1G28110 715 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.016G034400 [exp] 543 / 0 AT1G28110 566 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036000 [exp] 540 / 0 AT1G28110 548 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.016G034600 [exp] 540 / 0 AT1G28110 563 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036400 [exp] 534 / 0 AT2G33530 547 / 0.0 serine carboxypeptidase-like 46 (.1) Potri.002G071800 [exp] 392 / 7e-133 AT5G42240 742 / 0.0 serine carboxypeptidase-like 42 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10042287 pacid=23153651 polypeptide=Lus10042287 locus=Lus10042287.g ID=Lus10042287.BGIv1.0 annot-version=v1.0 ATGGAGCAGCAGCGGCGGCGACAATGGGGAAGCATTGTCTTCACGACGATGGCGGTCTTATTGGCTCTATCAATATTGGCTGAATCTTCACGGGAAACCG ATAAAATCACCGGTCTACCCGGTCAGCCGGTTGTTGGGTTCAACCAGTACTCCGGTTACATAACCGTGGATAAAATGCAGGGGAGGGCTCTGTTCTACTA TTTCGTCGAAGCCGAATCCGACCCCAATTCCAAGCCTCTCGTTTTATGGTTAAATGGAGGTCCGGGCTGTTCATCGGTGGGTGCGGGAGCTTTCTGCGAG CACGGTCCCTTCAAACCCAGTGGAGATGTTCTCCTCAAGAACGATCACAGCTGGAACAAAGAAGCAAATATGCTCTACTTGGAATCGCCGGCGGGAGTTG GGTTCTCATACTCTCCAAATTCCTCTTTCTACAACTCAGTGAATGATCACATTACAGCTCAAGACAATCTGTTGTTTCTGGAAGGATGGCTTGCCAAGTT CCCGGAGTTCAAGGGTCGAGACTTCTTAATCACCGGCGAAAGTTACGCCGGTCACTATGTTCCACAGCTTGCCCAGTTGATAGTCAAGTCCAAGCCACAC GTCAATCTCAAAGCAATAGCAATAGGGAACCCCCTGTTGGAATTCAACACGGATTTCAACTCTCGGGCGGAGTACTTCTGGTCTCATGGCCTAATCTCTG ATGCCACCTACGACATCTTCAACAAAGTGTGCAACTACTCCCAAATTAGGAGGCAGTTGCAGAGAGGGTTCTTCACTCCTGATTGCTTCCGGGTTAATGC CCAATCCTCTCAAGAAATCGGCAAGTTCGTCAATGCTTATGATGTTACTCTTGACGTCTGTTTGTCTTCCGTCGAGTCCCAATCCCGTGTCCTCGATACA GCAGGACGGAAAGTAGACGTGTGCGTGGAGGACGAGACGATTAAGTATCTGAACAGGAAAGATGTGCAGAAAGCTTTCCATGCACGGCTAGTTGGAGTGA AGACATGGAGCACTTGCAGCGATGTGGTGAGGTACGAAATGGAGAACCTGGAGACACCAACCACTCCAATTCTTGGATATCTCCTCAAGTCTGGGATCAA GGTTCTTGTTTACAGTGGAGATCAAGATTCAGTGATCCCACTTACTGGCACGAGGAAGATTGTGGATGGGCTGGCAAAGGAAAGTGGCCTAAACACTTCA GTCCCTTACAGTTCCTGGTTTCAGGGAAGTCAGGTTGCAGGGTGGACGCAGGTGTACGGTGATGTGTTGAGTTTTGCAACCATTAGAGGAGCATCCCATG AAGCTCCATTTTCTCAACCAGAAAGGTCACTTGTGTTGTTCAAGGCATTTGTGGGAGGAACCCAATTGCCAGCCAACTCTGTGGCTCATTGA
AA sequence Show only first row Show all	>Lus10042287 pacid=23153651 polypeptide=Lus10042287 locus=Lus10042287.g ID=Lus10042287.BGIv1.0 annot-version=v1.0 MEQQRRRQWGSIVFTTMAVLLALSILAESSRETDKITGLPGQPVVGFNQYSGYITVDKMQGRALFYYFVEAESDPNSKPLVLWLNGGPGCSSVGAGAFCE HGPFKPSGDVLLKNDHSWNKEANMLYLESPAGVGFSYSPNSSFYNSVNDHITAQDNLLFLEGWLAKFPEFKGRDFLITGESYAGHYVPQLAQLIVKSKPH VNLKAIAIGNPLLEFNTDFNSRAEYFWSHGLISDATYDIFNKVCNYSQIRRQLQRGFFTPDCFRVNAQSSQEIGKFVNAYDVTLDVCLSSVESQSRVLDT AGRKVDVCVEDETIKYLNRKDVQKAFHARLVGVKTWSTCSDVVRYEMENLETPTTPILGYLLKSGIKVLVYSGDQDSVIPLTGTRKIVDGLAKESGLNTS VPYSSWFQGSQVAGWTQVYGDVLSFATIRGASHEAPFSQPERSLVLFKAFVGGTQLPANSVAH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10042287 [exp]	0	1
AT3G51870			Mitochondrial substrate carrie...		Lus10004820 [exp]	6.2	0.8792
AT5G20045			unknown protein		Lus10019440 [exp]	6.5	0.9126
AT1G33110			MATE efflux family protein (.1...		Lus10003869 [exp]	7.3	0.8738
AT5G21930		ATHMA8, HMA8, P...	ARABIDOPSIS HEAVY METAL ATPASE...		Lus10038070 [exp]	8.8	0.9020
AT2G04400			Aldolase-type TIM barrel famil...		Lus10012310 [exp]	17.9	0.9116
AT5G23535			KOW domain-containing protein ...		Lus10042614 [exp]	19.6	0.8985
AT5G65640	bHLH	bHLH093	beta HLH protein 93 (.1.2)		Lus10039631 [exp]	20.5	0.8900
AT3G57630			exostosin family protein (.1.2...		Lus10042357 [exp]	22.8	0.8324
AT3G60870	AT-hook	AHL18	AT-hook motif nuclear-localize...		Lus10009301 [exp]	23.4	0.9077
AT1G65900			unknown protein		Lus10007381 [exp]	26.4	0.9064

Compare expression of checked genes

Lus10042287 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.