Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01940 77 / 3e-16 C2H2ZnF SGR5, ATIDD15 SHOOT GRAVITROPISM 5, ARABIDOPSIS THALIANA INDETERMINATE\(ID\)-DOMAIN 15, C2H2-like zinc finger protein (.1.2.3) AT1G25250 63 / 2e-11 C2H2ZnF ATIDD16 indeterminate(ID)-domain 16 (.1) AT1G68130 57 / 1e-09 C2H2ZnF IDD14beta, IDD14alpha, ATIDD14 indeterminate(ID)-domain 14 (.1), indeterminate(ID)-domain 14 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026369 [exp] 260 / 1e-85 AT2G01940 399 / 5e-137 SHOOT GRAVITROPISM 5, ARABIDOPSIS THALIANA INDETERMINATE\(ID\)-DOMAIN 15, C2H2-like zinc finger protein (.1.2.3) Lus10031314 [exp] 77 / 4e-16 AT1G25250 426 / 2e-146 indeterminate(ID)-domain 16 (.1) Lus10031883 [exp] 71 / 8e-16 AT2G01940 92 / 1e-23 SHOOT GRAVITROPISM 5, ARABIDOPSIS THALIANA INDETERMINATE\(ID\)-DOMAIN 15, C2H2-like zinc finger protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G040200 [exp] 88 / 6e-20 AT2G01940 420 / 2e-144 SHOOT GRAVITROPISM 5, ARABIDOPSIS THALIANA INDETERMINATE\(ID\)-DOMAIN 15, C2H2-like zinc finger protein (.1.2.3) Potri.015G033100 [exp] 87 / 2e-19 AT2G01940 431 / 1e-148 SHOOT GRAVITROPISM 5, ARABIDOPSIS THALIANA INDETERMINATE\(ID\)-DOMAIN 15, C2H2-like zinc finger protein (.1.2.3) Potri.008G140400 [exp] 77 / 6e-16 AT1G68130 437 / 5e-152 indeterminate(ID)-domain 14 (.1), indeterminate(ID)-domain 14 (.2) Potri.010G101200 [exp] 76 / 8e-16 AT1G68130 428 / 1e-148 indeterminate(ID)-domain 14 (.1), indeterminate(ID)-domain 14 (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042288 pacid=23153881 polypeptide=Lus10042288 locus=Lus10042288.g ID=Lus10042288.BGIv1.0 annot-version=v1.0 ATGCGGGCATGGGGTGACTGCCCTAGGGTGGAAAGTTTCATTGAGCACCAAGACTCTTGCACCATGAGCCGTCTCCGACCAGAACCAAACCCTTTTCCAT GCTCCTCTAGCCCCAGCCCTTCTGACGTCGGCACCCCACCACCACCACATCCACCTCCTCCTCGCCCGATCATCCCTCCGCCACGACCACCACCGTCCTT CTACTCCAACCACCACCACCGAAACCCGATGATGATCACCTCTCCCTTCATGTCATTCAACCCCAACATCATACCACACTACTACAACAACAACAACAGC AACAGCAACAACAATACCAACAACAAAGAAACACAAAATATCGACCTCGACCTTGACCTCCAGCTCTCCGTCGGGTGTTCAAACCACGATGGAGGACGAG ATCAGATGATGAGGGCGGAGAAGGCGTACGCGGAGGAGGCGAGGAAGGAGGCGAAGCGGCAGATACAGCTGGCGGAGGAGGAGTTCGCAAACGCAAAGAT GATACGTCAGCATGCCCAGGCTGAGCTGGACAGAGCCCACTGTTTGAAAGAGCAAGCCGTGAAGCAGATGAGGTCCTCCGACGTCGTGTTGCTCAACCTC ATGACGTGTACTGGCTGTCGGCAGAAGTTGACGGCGCATCAGGCGGCGGATGAGAACTCTCTGGTGGTGAGTTACGTGTCGTCTGGAGTTACGGATCATG GCGGCGAAGTGGAGAAAAGAAGATGA
AA sequence Show only first row Show all	>Lus10042288 pacid=23153881 polypeptide=Lus10042288 locus=Lus10042288.g ID=Lus10042288.BGIv1.0 annot-version=v1.0 MRAWGDCPRVESFIEHQDSCTMSRLRPEPNPFPCSSSPSPSDVGTPPPPHPPPPRPIIPPPRPPPSFYSNHHHRNPMMITSPFMSFNPNIIPHYYNNNNS NSNNNTNNKETQNIDLDLDLQLSVGCSNHDGGRDQMMRAEKAYAEEARKEAKRQIQLAEEEFANAKMIRQHAQAELDRAHCLKEQAVKQMRSSDVVLLNL MTCTGCRQKLTAHQAADENSLVVSYVSSGVTDHGGEVEKRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01940	C2H2ZnF	SGR5, ATIDD15	SHOOT GRAVITROPISM 5, ARABIDOP...		Lus10042288 [exp]	0	1
AT2G01940	C2H2ZnF	SGR5, ATIDD15	SHOOT GRAVITROPISM 5, ARABIDOP...		Lus10026369 [exp]	2.0	0.8294
AT4G34880			Amidase family protein (.1)		Lus10025066 [exp]	2.6	0.8198
AT3G15810			Protein of unknown function (D...		Lus10016666 [exp]	8.3	0.8474
AT4G21500			unknown protein		Lus10018431 [exp]	9.5	0.8013
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10029458 [exp]	10.1	0.8531
AT5G61820			unknown protein		Lus10004249 [exp]	11.6	0.8591
AT1G52140			unknown protein		Lus10012967 [exp]	11.6	0.8249
AT3G54820		PIP2D, PIP2;5	PLASMA MEMBRANE INTRINSIC PROT...		Lus10040399 [exp]	20.6	0.8245
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Lus10029351 [exp]	21.6	0.8113
AT1G01250	AP2_ERF		Integrase-type DNA-binding sup...		Lus10030242 [exp]	21.8	0.8035

Compare expression of checked genes

Lus10042288 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.