Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73390 630 / 0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4) AT1G17940 605 / 0 Endosomal targeting BRO1-like domain-containing protein (.1) AT5G14020 273 / 5e-88 Endosomal targeting BRO1-like domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026368 [exp] 724 / 0 AT1G73390 613 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4) Lus10031881 [exp] 716 / 0 AT1G73390 704 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4) Lus10031313 [exp] 700 / 0 AT1G73390 690 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4) Lus10041527 [exp] 336 / 1e-112 AT5G14020 483 / 6e-171 Endosomal targeting BRO1-like domain-containing protein (.1) Lus10012563 [exp] 335 / 3e-112 AT5G14020 486 / 9e-172 Endosomal targeting BRO1-like domain-containing protein (.1) Lus10035167 [exp] 319 / 1e-105 AT5G14020 497 / 4e-176 Endosomal targeting BRO1-like domain-containing protein (.1) Lus10031997 [exp] 315 / 3e-104 AT5G14020 504 / 9e-179 Endosomal targeting BRO1-like domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G067400 [exp] 680 / 0 AT1G73390 647 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4) Potri.017G154200 [exp] 615 / 0 AT1G73390 563 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4) Potri.017G062000 [exp] 322 / 8e-107 AT5G14020 524 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1) Potri.001G323600 [exp] 311 / 2e-102 AT5G14020 521 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03097 [flax] [poplar] BRO1 BRO1-like domain
Representative CDS sequence Show only first row Show all	>Lus10042289 pacid=23153787 polypeptide=Lus10042289 locus=Lus10042289.g ID=Lus10042289.BGIv1.0 annot-version=v1.0 ATGGGGTGCATAGTTTCTACGCCTAAGGAATCCGGTGGGAACAGGAGGAAACCTGCCAGTATCGGGGAGCTATCTGTATATGTACCAGGGTTTCGAATAC CTAAACCTGCTGATTTCTCTCAGGCTCTTGATGACCATTTGTCGAAGAGCTTAATTGAACGCCTCTCGGCTCTAAGAACCCGTATTGTGGTTATGGCAGG CCAAGAAGCACCCACTGTCACCAGGACTCGGAGGCGAAGTGCTACTCGACATGGTGGTTCGACCTTGGCTGATCTTTATCAAGCTCTTGAGGATTACTTG CCTGTTCTCCTGGGTTTGGTTAAAGATGGTAGCCAACTACAACATAAAATCCAATTTGCATGGGTGAATCAAGAGGATGAGGCAGAGGAAACGGCACTGT CAAACGCGTGGTATGAGGTACTCTCGGTTTTACACTTGATGGCTGTACTATCATTATCACAGGCAAACTTGTTACTTCTCCCAAGAACATCTACTGACGG TTATCAGCACAAAGTATCAGAAGAGAACAAGCGAGCATCTGTCGACATATTCTTGAAGGCTGCTGGACACTTGGATTGTGCAGTTAGGCATGTTCTTCCG CATTTACCTGCTGCACTGAGGAGAGACTTACCAGTGGACCTTGCCGAAGCAGTTCTTCGAGCACTCAGCCTGCAGGCATTGGGGCAGACCGTTGATATCC AACTCGGGATGGCTATAGATAGTGCGAAAGCCACACTGGCGGTGAAGCGGAGGCTCGCCTGTGAGATGGTGAAGTACTGGCAGCAGGCTCAAGATAACAT AATGAATCTTCCGCTAGCAAATGGCTGGGGTGAAAAGCACACACTTTTCATCAAATGGAAATATGTGGAATCAAGGGCTGCAGCTTATTATTACCACGGC TTAATCCTTGACGAAGGGAACACTGACAAATCTCATGGGATGGCCGTAGATGCACTGCAGGCAGCAGATGAGTATTTCAAAGAGAGCAAAAGGGCATGCG AGGCGTTTAATGCAGCTTCCCCTACGTCGAGAAATCCACCACTTTGGGGAACCATGAAGTACCTATCAGAGAAAATCCCCAGAGATACGTCCAGCAAAGT GCGGAGTAATCGCGATCTATACTCTCATGAAAAAATCATGGAGATTGCACCAACACTACCTGATTTCGCATTAGCCCTAAAACCCGACGATTATCAGCTA CCTCCAGTTGATCCCTCCTGGAATGATGAGAACAACAGAGGGCCAATCTCGAATGGAAACCAACTCGAATGCTGA
AA sequence Show only first row Show all	>Lus10042289 pacid=23153787 polypeptide=Lus10042289 locus=Lus10042289.g ID=Lus10042289.BGIv1.0 annot-version=v1.0 MGCIVSTPKESGGNRRKPASIGELSVYVPGFRIPKPADFSQALDDHLSKSLIERLSALRTRIVVMAGQEAPTVTRTRRRSATRHGGSTLADLYQALEDYL PVLLGLVKDGSQLQHKIQFAWVNQEDEAEETALSNAWYEVLSVLHLMAVLSLSQANLLLLPRTSTDGYQHKVSEENKRASVDIFLKAAGHLDCAVRHVLP HLPAALRRDLPVDLAEAVLRALSLQALGQTVDIQLGMAIDSAKATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHTLFIKWKYVESRAAAYYYHG LILDEGNTDKSHGMAVDALQAADEYFKESKRACEAFNAASPTSRNPPLWGTMKYLSEKIPRDTSSKVRSNRDLYSHEKIMEIAPTLPDFALALKPDDYQL PPVDPSWNDENNRGPISNGNQLEC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73390			Endosomal targeting BRO1-like ...		Lus10042289 [exp]	0	1
AT3G27030			unknown protein		Lus10041550 [exp]	1.0	0.8624
AT3G22550			Protein of unknown function (D...		Lus10035894 [exp]	1.4	0.8472
AT5G23090	CCAAT	NF-YB13	"nuclear factor Y, subunit B13...		Lus10009614 [exp]	1.7	0.8452
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10018595 [exp]	2.4	0.8325
AT5G13550		SULTR4;1	sulfate transporter 4.1 (.1)		Lus10023440 [exp]	5.5	0.7960
AT1G68140			Protein of unknown function (D...		Lus10025356 [exp]	7.3	0.7985
AT2G48030			DNAse I-like superfamily prote...		Lus10029630 [exp]	8.5	0.8030
AT3G18670			Ankyrin repeat family protein ...		Lus10003282 [exp]	8.8	0.7628
AT5G38220			alpha/beta-Hydrolases superfam...		Lus10033575 [exp]	8.9	0.7602
AT5G06130			chaperone protein dnaJ-related...		Lus10022688 [exp]	9.4	0.8284

Compare expression of checked genes

Lus10042289 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.