Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05070 164 / 1e-52 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026367 [exp] 239 / 3e-82 AT3G05070 198 / 3e-66 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G067300 [exp] 163 / 3e-52 AT3G05070 149 / 8e-47 unknown protein Potri.017G154100 [exp] 108 / 1e-31 AT3G05070 100 / 1e-28 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08315 [flax] [poplar] cwf18 cwf18 pre-mRNA splicing factor
Representative CDS sequence Show only first row Show all	>Lus10042290 pacid=23153528 polypeptide=Lus10042290 locus=Lus10042290.g ID=Lus10042290.BGIv1.0 annot-version=v1.0 ATGACGAGTGAGGAATCCTCCGCGGAACAAGCTGCAGCAGAGCGACGCGAAAGGCTGAAGGCTCTTAAAGCTGCTCAGGAGCTCTCGAACACCCCTAATG AAGCTACTGAACGACCCGAAGATAAGACGGATCAGGAGGATGGACAGGCTGATGGAAATTATCCAGGGTTGAAGTTTCGAAATTATGTGCCTCAAGCAAA GGAGCTCCAGGAGGGCAGGCTGGCTCCACCGGTACTGCCAAAGTTTGAAGATCCTGTTGCTGCAGCCCCTCCCCCAACAGAGAAGAAAGAGGTGGATCCA TTCCTCAACATTGCTCCCAAGAAACCAAACTGGGACTTACGAAGAGACGTGCAGAAGAAGCTGGATAAGCTTGAGCGACGAACTCAGAAAGCTTTATACA AACTTATGGAGGAACAGGAGAAGGAGAGACAGGCAGCTGAAACCATTGAAGAAGATTAG
AA sequence Show only first row Show all	>Lus10042290 pacid=23153528 polypeptide=Lus10042290 locus=Lus10042290.g ID=Lus10042290.BGIv1.0 annot-version=v1.0 MTSEESSAEQAAAERRERLKALKAAQELSNTPNEATERPEDKTDQEDGQADGNYPGLKFRNYVPQAKELQEGRLAPPVLPKFEDPVAAAPPPTEKKEVDP FLNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKERQAAETIEED

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05070			unknown protein		Lus10042290 [exp]	0	1
AT4G30220		RUXF	small nuclear ribonucleoprotei...		Lus10037606 [exp]	3.7	0.8619
					Lus10030724 [exp]	4.9	0.8340
AT1G05205			unknown protein		Lus10027173 [exp]	6.2	0.8529
AT2G21240	BBR_BPC	BPC4, BBR/BPC4,...	basic pentacysteine 4 (.1.2)		Lus10031078 [exp]	11.0	0.8251
AT2G26470			unknown protein		Lus10038230 [exp]	11.4	0.8137
AT1G11240			unknown protein		Lus10018438 [exp]	11.5	0.8216
AT5G02530			RNA-binding (RRM/RBD/RNP motif...		Lus10040851 [exp]	12.3	0.8183
AT3G59650			mitochondrial ribosomal protei...		Lus10006114 [exp]	15.0	0.8026
AT2G20490		NOP10, EDA27	EMBRYO SAC DEVELOPMENT ARREST ...		Lus10024913 [exp]	15.3	0.7959
AT2G47640			Small nuclear ribonucleoprotei...		Lus10007876 [exp]	17.2	0.8147

Compare expression of checked genes

Lus10042290 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.