Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36590 57 / 5e-10 MADS MADS-box transcription factor family protein (.1) AT5G60440 57 / 7e-10 MADS AGL62 AGAMOUS-like 62 (.1) AT1G65360 52 / 5e-08 MADS AGL23 AGAMOUS-like 23 (.1) AT1G01530 51 / 7e-08 MADS AGL28 AGAMOUS-like 28 (.1) AT3G54340 50 / 1e-07 MADS AP3, ATAP3 APETALA 3, K-box region and MADS-box transcription factor family protein (.1) AT2G24840 49 / 4e-07 MADS DIA, AGL61 DIANA, AGAMOUS-like 61 (.1) AT5G51870 48 / 5e-07 MADS AGL71 AGAMOUS-like 71 (.1.2.3) AT1G22130 48 / 1e-06 MADS AGL104 AGAMOUS-like 104 (.1) AT3G57390 47 / 2e-06 MADS AGL18 AGAMOUS-like 18 (.1.2) AT1G60920 46 / 2e-06 MADS AGL55 AGAMOUS-like 55 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015726 [exp] 61 / 1e-11 AT5G60440 102 / 2e-26 AGAMOUS-like 62 (.1) Lus10037450 [exp] 57 / 4e-10 AT5G60440 101 / 7e-26 AGAMOUS-like 62 (.1) Lus10003940 [exp] 57 / 8e-10 AT5G60440 102 / 2e-25 AGAMOUS-like 62 (.1) Lus10030663 [exp] 56 / 1e-09 AT2G24840 122 / 2e-34 DIANA, AGAMOUS-like 61 (.1) Lus10003481 [exp] 56 / 2e-09 AT5G60440 99 / 7e-25 AGAMOUS-like 62 (.1) Lus10030824 [exp] 55 / 2e-09 AT2G24840 124 / 4e-35 DIANA, AGAMOUS-like 61 (.1) Lus10031073 [exp] 54 / 9e-09 AT5G60440 129 / 5e-36 AGAMOUS-like 62 (.1) Lus10035456 [exp] 53 / 3e-08 AT5G60440 124 / 5e-34 AGAMOUS-like 62 (.1) Lus10016810 [exp] 51 / 1e-07 AT1G22130 239 / 5e-77 AGAMOUS-like 104 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G002400 [exp] 63 / 2e-12 AT5G60440 107 / 3e-28 AGAMOUS-like 62 (.1) Potri.004G130900 [exp] 62 / 5e-12 AT3G04100 140 / 5e-42 AGAMOUS-like 57 (.1) Potri.009G045900 [exp] 62 / 5e-12 AT3G04100 121 / 2e-34 AGAMOUS-like 57 (.1) Potri.001G251400 [exp] 62 / 7e-12 AT5G60440 112 / 3e-30 AGAMOUS-like 62 (.1) Potri.004G010200 [exp] 60 / 3e-11 AT5G60440 100 / 5e-26 AGAMOUS-like 62 (.1) Potri.016G118900 [exp] 60 / 3e-11 AT5G60440 123 / 4e-34 AGAMOUS-like 62 (.1) Potri.017G047300 [exp] 61 / 4e-11 AT5G60440 185 / 2e-57 AGAMOUS-like 62 (.1) Potri.009G046100 [exp] 58 / 1e-10 AT5G60440 115 / 6e-32 AGAMOUS-like 62 (.1) Potri.017G040700 [exp] 58 / 2e-10 AT5G60440 122 / 5e-34 AGAMOUS-like 62 (.1) Potri.007G113800 [exp] 58 / 3e-10 AT5G60440 191 / 4e-60 AGAMOUS-like 62 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10042291 pacid=23153459 polypeptide=Lus10042291 locus=Lus10042291.g ID=Lus10042291.BGIv1.0 annot-version=v1.0 ATGAGCCCTCTACTCGGCGAATCACCGTCTACCGCAATGTCGACCGCCGGCAAACTCAACAACGACAACAGCAACAACAACAACGAGAACGAGAACTCCT CATCTTCTTCCTCCACCGCCGCCGCAGTCCTAGACCGTGCAGTCGTCGTCGGCGGCGGGAGGCGGCGCAAGATCGAGATCAAGAGAATCGAGGACCAGTC GAGCCTGTTCGTCGCGTTCTCGAAGCGGCGGAACGGCCTCTTCAAGAAACTGAAAAAGTTCGTCAGTCTTAACGAGAAAGGAACGCAGGCGGCGGTGGTG ACGTTCTCCCCTGCCGCGAACAAGGTGCACGCGGACGGCACCCCTGCCGTTGAGCCTGTACTCCGTCGCTTCCTGGATGAGATCGTCGCCGGTGGATCGG AGGCCAAGCTACCGCGGCAGGCGACGAATATTGGTTCGAAGAGAAAGAGAACAGAGGGGAGGGATCAGATGTTGGTGCTGGACGAATCGGAGGCGGCGTG GTTGGAATTCCGACGGGAAGTGGAGATGAGAATGACGGAGGAGACTGTCCGTGAAGTCCGGACCGTTAATTACTTCATCTGA
AA sequence Show only first row Show all	>Lus10042291 pacid=23153459 polypeptide=Lus10042291 locus=Lus10042291.g ID=Lus10042291.BGIv1.0 annot-version=v1.0 MSPLLGESPSTAMSTAGKLNNDNSNNNNENENSSSSSSTAAAVLDRAVVVGGGRRRKIEIKRIEDQSSLFVAFSKRRNGLFKKLKKFVSLNEKGTQAAVV TFSPAANKVHADGTPAVEPVLRRFLDEIVAGGSEAKLPRQATNIGSKRKRTEGRDQMLVLDESEAAWLEFRREVEMRMTEETVREVRTVNYFI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36590	MADS		MADS-box transcription factor ...		Lus10042291 [exp]	0	1
AT4G21920			unknown protein		Lus10006774 [exp]	12.6	0.8788
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Lus10042486 [exp]	22.9	0.8318
AT2G40600			appr-1-p processing enzyme fam...		Lus10034225 [exp]	27.1	0.8196
AT3G23880			F-box and associated interacti...		Lus10036065 [exp]	27.8	0.8261
					Lus10023874 [exp]	70.6	0.7970
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10020734 [exp]	112.2	0.7446
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Lus10009386 [exp]	118.3	0.7867
AT2G18680			unknown protein		Lus10015508 [exp]	144.9	0.7502
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10021193 [exp]	160.8	0.7685
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Lus10013470 [exp]	180.7	0.7503

Compare expression of checked genes

Lus10042291 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.